Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1093 ATGGCACATGTTCTTCTACGTCGCCCTCCTCTGCTTCGTGTCATCATGGCCTCTCGCTTCATCACCTCCTCTTCCTTTCACATGCGCCTTTCTTCATTCCCTTCCTCTACTCTCTCCAAAACCAGGACGAGTTTTCCTCTGAGAAAGTTTTTGGCTCCCTGTTGTTCGGTTCCAAATGCGTTCACTCCAAGGGCGTTTATGTCTTCTATCTCGGCGACCGAAGCTTTTCTCAAAAGTGAAAGTTCCACAGCTTATAGTTCTGATCAAATTCAGGTGCTTGAAGGCTTGGACCCTGTGAGGAAAAGGCCCGGGATGTATATTGGAAGCACCGGTCCACGAGGGTTGCACCATTTGGTGTACGAAATTTTGGATAATTCTGTTGACGAAGCTCAAGCTGGGTTTGCTTCCAAGATTTATGTTGTTTTGCATGCGGATGATTCTGTGAGCATCACAGACAATGGTCGTGGGATTCCTACTGACTTGCATCCAGTTACAAATAAATCTGCCTTGGAGACAGTGTTGACGGTCTTGCATGCTGGCGGAAAATTTGGTGGTGCCAACAGCGGCTACTCTGTTTCAGGAGGTTTACACGGTGTTGGTTTGTCTGTTGTTAATGCCTTGTCTGAGTCGCTAGAGATAACAGTTTGGCGTGATGGGATGGAATACATGCAAACATATTCTCGTGGAAAACCAGTGTCAATTCTGAAATGCCTTGTGCTTCCAGATGAAAGGAAAGATCTTCGAGGGACACGTGTCAGATTTTGGCCTGACAAAGAAGTATTCACCACTGCTATTCAGTTTGATCACAACACAATAGCTGGACGCATTAGGGAATTAGCTTTCCTCAACCCAAAGCTTACAATCACGCTTCGGAAAGAGGACAATGATCCAGAGAAAGTTCAATATAATGAATATTTCTATGCTGGGGGATTGGTTGAATATGTGAAATGGCTTAACACCGATAAGAAAGCTCTTCATGATGTTCTGAGTTTTAGAAAAGAAACAGATGGCATCACAGTTGATATAGCTTTTCAATGGTGTGAAGATGCATATTCAGATACAATACTGGGATATGCTAATAGTATACGCACTATTGATGGTGGTACTCATATTGATGCTATGAAGGCTTCTATAACAAGAACACTTAATAGTCTTGGAAAGAAGTCAAAAGTTATTAAGGAGAAGGATATTACTCTAAGTGGCGAGCATGTGAGAGAGGGTCTAACATGTGTTGTCTCAGTCAAGGTCCCAAATCCTGAGTTTGAAGGACAAACAAAGACAAGGTTAGGAAATCCAGAGGTGCGAAAAGTGGTTGATCAATCTATTCAAGAATATCTTACTGAGTATTTAGAATTGCATCCAGATGTTCTTGATTCAGTACTTTCTAAAGCTCTTAATGCTTTCAAGGCAGCTCTGGCAGCAAAAAGAGCAAGGGAATTGGTGAGACAAAAGAGTGTATTGAGATCTTCTTCTCTTCCAGGAAAACTAGCTGATTGTTCATCTACAGATCCTGAAGAATGTGAAATCTTTATAGTTGAAGGTGATTCAGCTGGAGGAAGTGCTAAACAAGGGCGTGACAGGCGCTTCCAGGCCATTCTCCCTCTGAGGGGTAAGATTCTGAATATTGAAAGAAGGGATGAAGCAGCAATGTACAAAAATGAAGAAATCCAAAATTTAATTCTTGGTCTTGGTCTTGGAGTGAAGGGAGAGGATTTTAAAAAGGATGCACTCCGATATCATAAGATTATTATTTTGACTGATGCTGATGTGGATGGTGCCCATATCCGAACTTTGCTACTGACATTTTTCTTCAGATATCAGAGAGCTTTGTTTGATGAAGGTTGCATATATGTTGGTGTTCCACCATTGTACAAGGTTGTAAGGGGAAAACAAGTGCACTATTGCTATGATGATGCTGACCTTAAAAAGCTTCAAAGATCATTCCCTGCTAATGCATCATACAACATGCAAAGGTTCAAAGGGTTGGGAGAGATGATGCCTTTACAACTATGGGAAACAACCATGGATCCAGAACGCAGGTTATTGAAGCAATTAAAAGTTGAGGATGCAGCAGAAGCAAATATTGTTTTTTCGTCTCTTATGGGTACTAGGGTGGATGTTCGGAAGGAACTCATACGAAATTCTGCAAGCCTGATTGATCTTCATCAGCTAGATATTTGA 2181 0.4177 MAHVLLRRPPLLRVIMASRFITSSSFHMRLSSFPSSTLSKTRTSFPLRKFLAPCCSVPNAFTPRAFMSSISATEAFLKSESSTAYSSDQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNSVDEAQAGFASKIYVVLHADDSVSITDNGRGIPTDLHPVTNKSALETVLTVLHAGGKFGGANSGYSVSGGLHGVGLSVVNALSESLEITVWRDGMEYMQTYSRGKPVSILKCLVLPDERKDLRGTRVRFWPDKEVFTTAIQFDHNTIAGRIRELAFLNPKLTITLRKEDNDPEKVQYNEYFYAGGLVEYVKWLNTDKKALHDVLSFRKETDGITVDIAFQWCEDAYSDTILGYANSIRTIDGGTHIDAMKASITRTLNSLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSTDPEECEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVVRGKQVHYCYDDADLKKLQRSFPANASYNMQRFKGLGEMMPLQLWETTMDPERRLLKQLKVEDAAEANIVFSSLMGTRVDVRKELIRNSASLIDLHQLDI* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1093 726 CDD TOPRIM_TopoIIA_GyrB 507 621 IPR034160 -
Gso3g1093 726 SMART topII5 114 717 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Gso3g1093 726 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 112 259 IPR003594 -
Gso3g1093 726 PRINTS DNA gyrase subunit B signature 85 95 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Gso3g1093 726 PRINTS DNA gyrase subunit B signature 266 281 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Gso3g1093 726 PRINTS DNA gyrase subunit B signature 281 294 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Gso3g1093 726 PRINTS DNA gyrase subunit B signature 309 331 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Gso3g1093 726 PRINTS DNA gyrase subunit B signature 401 417 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Gso3g1093 726 PRINTS DNA gyrase subunit B signature 449 463 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Gso3g1093 726 PRINTS DNA gyrase subunit B signature 463 483 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Gso3g1093 726 PRINTS DNA gyrase subunit B signature 559 568 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Gso3g1093 726 PRINTS DNA gyrase subunit B signature 677 689 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Gso3g1093 726 PRINTS DNA gyrase subunit B signature 693 709 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Gso3g1093 726 SUPERFAMILY Type II DNA topoisomerase 484 715 IPR013760 GO:0003918|GO:0005524
Gso3g1093 726 ProSiteProfiles Toprim domain profile. 507 614 IPR006171 -
Gso3g1093 726 SMART HKATPase_4 110 260 IPR003594 -
Gso3g1093 726 Pfam DNA gyrase B subunit, carboxyl terminus 652 712 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Gso3g1093 726 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 41 726 - -
Gso3g1093 726 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 85 299 IPR036890 -
Gso3g1093 726 PRINTS DNA topoisomerase II family signature 114 129 - -
Gso3g1093 726 PRINTS DNA topoisomerase II family signature 149 162 - -
Gso3g1093 726 PRINTS DNA topoisomerase II family signature 194 208 - -
Gso3g1093 726 PRINTS DNA topoisomerase II family signature 357 370 - -
Gso3g1093 726 PRINTS DNA topoisomerase II family signature 509 523 - -
Gso3g1093 726 PRINTS DNA topoisomerase II family signature 576 592 - -
Gso3g1093 726 PRINTS DNA topoisomerase II family signature 594 611 - -
Gso3g1093 726 PRINTS DNA topoisomerase II family signature 614 626 - -
Gso3g1093 726 PRINTS DNA topoisomerase II family signature 656 672 - -
Gso3g1093 726 TIGRFAM gyrB: DNA gyrase, B subunit 85 726 IPR011557 GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265
Gso3g1093 726 CDD HATPase_GyrB-like 115 300 - -
Gso3g1093 726 Pfam Toprim domain 508 609 IPR006171 -
Gso3g1093 726 PANTHER DNA GYRASE SUBUNIT B 41 726 - -
Gso3g1093 726 Pfam DNA gyrase B 310 479 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Gso3g1093 726 Gene3D - 309 487 IPR014721 -
Gso3g1093 726 CDD TopoII_Trans_DNA_gyrase 309 463 - -
Gso3g1093 726 SUPERFAMILY Ribosomal protein S5 domain 2-like 310 480 IPR020568 -
Gso3g1093 726 ProSitePatterns DNA topoisomerase II signature. 511 519 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Gso3g1093 726 Gene3D - 488 725 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Gso3g1093 726 Gene3D - 82 308 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1093 Gso-Chr3 36044126 36055500 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1093 K02470 - gmx:100779534 1394.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1093 3 36044126 36055500 Gso3g1093 3 36044126 36055500 ECH
Gso19g1088 19 38866799 38881197 Gso3g1093 3 36044126 36055500 GST