Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1086 ATGAACGGTGGTCCATCTGGTTTCACAAATGCTCCCGTCACAAGGGCCTTCATCATCGCTTCGGCGCTTTTCACAATCTTCTTTGGGATCCAAGGCCGTTTCGGCACTCTGGGGTTGTCGTATCAGGATATTTTTGGAAAGATTCGCCTTTGGAAGTTGATCATGTCCATATTTTCCTTCTCGTCAACACCAGAGTTGATGTTTGGACTGTATCTTCTATATTACTTCAGGGTCTTTGAGCGACAGATAGGTTCCAATAAATACTCAGTCTTTATCGTGTTCTCCATATTAACTTCACTACTGCTTGAGGTCCTTGCTGTAGCACTTTTAAAAGATCCTACAGCAAACCTAGTCACTCCTGGACCATATGGCCTTATATTTGCTTCATTTGTACCCTTTTTCTTTGACATTCCAGTTTCAACACGGTTTCGTGTGTTTAGCTTCCTCTTCTCAGACAAGTCATTCATATATCTAGCTGGTCTTCAGCTTCTTTTGTCATCATGGAAAAGGTCTATCTTACCGGGGATGTGTGGCATCCTTGCTGGTTCCTTGTACCGTTTGAATGTCTTTTACATTCGCAAAGCAAAGTTCCCAGAGATGATCTCATCATTATTTTCAAGAATTTCGTTGCCATCTATGGGGAGTCCACGTGCACCATCATCAGCAAGGAATGTTGTCAGGAATTTACCTTCCTATCCAACTCACCAAATGGAGAGAAACTACCCTGCTCCAATGCAAGCTGCAGTAGAGCCAACGGAGGACTCGATCACTACCCTTGTCTCTATGGGCTTTGACAGGAATTCTGCCAGACAAGCCCTAGTGCAGGCCAGAAATGATGTCAATGTGGCCACCAACATCCTACTGGAGGCACAGTCGCACTAA 882 0.4444 MNGGPSGFTNAPVTRAFIIASALFTIFFGIQGRFGTLGLSYQDIFGKIRLWKLIMSIFSFSSTPELMFGLYLLYYFRVFERQIGSNKYSVFIVFSILTSLLLEVLAVALLKDPTANLVTPGPYGLIFASFVPFFFDIPVSTRFRVFSFLFSDKSFIYLAGLQLLLSSWKRSILPGMCGILAGSLYRLNVFYIRKAKFPEMISSLFSRISLPSMGSPRAPSSARNVVRNLPSYPTHQMERNYPAPMQAAVEPTEDSITTLVSMGFDRNSARQALVQARNDVNVATNILLEAQSH* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1086 293 Pfam UBA/TS-N domain 253 287 IPR015940 -
Gso3g1086 293 SUPERFAMILY Rhomboid-like 11 187 IPR035952 -
Gso3g1086 293 Gene3D - 220 292 - -
Gso3g1086 293 SUPERFAMILY UBA-like 237 289 IPR009060 GO:0005515
Gso3g1086 293 Gene3D - 9 188 IPR035952 -
Gso3g1086 293 SMART uba_6 252 289 IPR015940 -
Gso3g1086 293 Pfam Rhomboid family 49 189 IPR022764 GO:0004252|GO:0016021
Gso3g1086 293 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 250 290 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1086 Gso-Chr3 35962154 35970654 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1086 K25216 - gmx:100777938 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1086 3 35962154 35970654 Gso3g1086 3 35962154 35970654 ECH
Gso19g1083 19 38801116 38819234 Gso3g1086 3 35962154 35970654 GST