Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1055 ATGACAGAGGTGTTGATGTGTATCGCCAGTGTCTCTGAGCTGAGTCCAGACGAGGAGAGGATCTTGATCAGAGACATTGCTCTCGCTTCCCAAGCTAACAGCAAAGAAGGCGACACCTTCTTCTTAATCACTCAGAGATGGTGGCAACATTGGATTGAATATGTGAACCAAGACCAGACAAATACTTCATATGATGCATCTTCCTTATCAGAACAATTTGATTTGGCCAATTCAAGTGCATTAAAGAGGCCAGCTGGTATTGATAATTCTGATTTGATAGACGATGCTGTGTTAGAGGACTCTGGTACGGGTATTGAGATTCATGATACACTTTTAGAAGGCCGTGACTATGTATTACTTCCCCAAGAAGTTTGGAACCAATTATTTAGATGGTATGGTGGTGGACCTACATTGGCAAGGAAAGTTATTAGTTCAGGTCTTTCCCAGACTGAATTGGCAGTAGAGGTTTATCCTTTACGGCTTCAATTACTTATGTTGCCAAAAAATGACCGTTTCCCTATAAGAATAAGCAAGAAGGAAACCATTGGGCAGCTTCACAGAAAAGCTTGTGAAATATTTGATCTTCAGCCAGACCAAGTGTGTATTTGGGATTACTATGCCCGTCGAAGGCATGCTTTGATGAATGACATGGACAAAACTCTCGACGATGCTAATTTACAAATGGACCAAGATATTCTTGTTGAGGTCATCAATAATACAAACAACACAAGTTTTGCTCAAGAAAATGGGTCTGCACAGAGGGAAGCAAATTCCGCTCTTGTGGAGCCTTCAAAATCAAGCTTATCAATTGCTGGTGGCTTATCTGCTAGCAGAGGTGCATCTAAAGGCTACAACACAGACCTTTCTTCATCTCAGAACTTAAATTCTCCGGTTAGAGATGTGGAAAACCCTTATGGAACTAGTGGTGTCACCACAAGAAGTTCATTCCTTGGTCTCACTGGATTGCTGAATCTTGGCAATACTTGTTACATGAATAGTGCAATACAGTGCCTTGTTCATACACCGGAATTTGCTAGGTACTTCAGGGAAGACTATCACCGAGAGATAAATTGGCAAAATCCATTGGGCATGGTTGGTGAACTAGCCCTAGCATTTGGTGAGTTGCTTCGAAAACTATGGGCACCTGGGCGAACACCAATTGCTCCTCGGCCTTTTAAAGCAAAGCTTGTTCGCTTTGCACCTCAGTTCAGTGGGCACAATCAACATGATTCTCAGGAGCTTTTAGCATTTCTTCTTGATGGTCTTCATGAAGACTTGAATCGTGTAAAGCACAAACCATATATAAAATCTCGAGATGCTGATGGCCGACCTGATGAAGAAGTGGCTGACGAATATTGGGCAAATCATATTGCTCGTAATGATTCCATAATTGTTGATGTATGCCAGGGACAATACAAGTCAACTTTGGTTTGTCCAGTTTGCAATAAAGTCTCTGTCACATTTGATCCTTTTATGTACCTTTCCCTGCCACTCCAGCCCACCACCAATAGAACCATGACAGTGACAGTTTTTGCTTGCGATGGAGCCTCCCTTCCATTTTCTTGTACAGTAACTGTCCCTAAGCAGGGACGATGCAGAGATCTCATACAGGCACTTAGCAATGCTTGCTCATTGAAGCACAATGAGAGGCTAGTACTTGTGGAGATACGAAACCATTTGATCCATAGATATTTTGAAGATCCTCTTCAATTGTTGTCTAATATCAAAGATGATGACCGTCTTGCTGCTTACAAGGTTCCAAAGATAGACAAGAACACAAAGTATCTCCAGTTGATACATCGCCAAAGAGAGCAGAGTAGTGACTCACACATCATATCTGGATGGAAACCATATGGAACACCTATTGTTTCATTGATTTCATGTGATGATACTGTCACAAGAGGTGATATACAAGTAATAGTTAATTGTATGCTCTCTCCGCTGCTAAGGAAAGGTATCAATGTAGAACAAGCTACCACTTCTGAAACAAGCATCCCAAAAGCAACATCTGATCATTGCAGTTTTAATTCTGATGATGATGCATGTGCCCCCAACATGATGTCAAATTCAGTAAATAAGGATACTACCAATTCAAAGGCACCCCCAATGCCATTGCCAACATTACCTCTTCTCTTGGTAGATGATAACAATGCTTGCATTGATCTTTCAATGGGAGAGGAGAAAGTAGTTAAACTGTCTCCATTGTCACCAAAGATTTTAGTGTATATTGATTGGTCTCAGAAGCTTCTGGAGAAGTATGATACTCATACACTTGAGACTTTGCCTGAAGTTTTAAAATATGGACCTGTAACCAAGAAAGCTCGTACTGAACCTCTCTCCTTGTACACCTGCTTGGAAGCTTTTCTGCGTGAAGAACCTCTGGTGCCCGAAGATATGTGGTACTGTCCTAAATGCAAAGAGAGACGACAAGCAAGCAAGAAGCTTGATTTGTGGAGACTCCCAGAGGTTTTGGTCATTCATTTGAAGAGGTTCTCATACAGCAGGTCAATGAAGCATAAACTGGAGACTTTTGTTAACTTTCCCATTCATGATTTTGATTTAACTAATTACATAGCCAACAAAAACAACTCTCGGCGTCAACTGTACGAACTGTATGCCCTTACAAATCATTATGGCAGTATGGGTAGCGGACATTACACTGCACATATTAAGCTTTTAGATGAGAACAGGTGGTACAATTTTGATGACAGCCACATATCACTCATAAGTGAAGATGAGGTTAACACTGCTGCTGCCTATGTACTATTTTACCGCAGGGTGAAGACTGACGATGCCGCTGTTAGCAATGGGGCTTAG 2817 0.415 MTEVLMCIASVSELSPDEERILIRDIALASQANSKEGDTFFLITQRWWQHWIEYVNQDQTNTSYDASSLSEQFDLANSSALKRPAGIDNSDLIDDAVLEDSGTGIEIHDTLLEGRDYVLLPQEVWNQLFRWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLMLPKNDRFPIRISKKETIGQLHRKACEIFDLQPDQVCIWDYYARRRHALMNDMDKTLDDANLQMDQDILVEVINNTNNTSFAQENGSAQREANSALVEPSKSSLSIAGGLSASRGASKGYNTDLSSSQNLNSPVRDVENPYGTSGVTTRSSFLGLTGLLNLGNTCYMNSAIQCLVHTPEFARYFREDYHREINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKAKLVRFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQPTTNRTMTVTVFACDGASLPFSCTVTVPKQGRCRDLIQALSNACSLKHNERLVLVEIRNHLIHRYFEDPLQLLSNIKDDDRLAAYKVPKIDKNTKYLQLIHRQREQSSDSHIISGWKPYGTPIVSLISCDDTVTRGDIQVIVNCMLSPLLRKGINVEQATTSETSIPKATSDHCSFNSDDDACAPNMMSNSVNKDTTNSKAPPMPLPTLPLLLVDDNNACIDLSMGEEKVVKLSPLSPKILVYIDWSQKLLEKYDTHTLETLPEVLKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQLYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHISLISEDEVNTAAAYVLFYRRVKTDDAAVSNGA* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1055 938 Pfam DUSP domain 37 143 IPR006615 GO:0004843
Gso3g1055 938 SUPERFAMILY Cysteine proteinases 318 927 IPR038765 -
Gso3g1055 938 CDD Peptidase_C19R 772 925 - -
Gso3g1055 938 MobiDBLite consensus disorder prediction 282 306 - -
Gso3g1055 938 Gene3D Cysteine proteinases 741 935 - -
Gso3g1055 938 Gene3D - 157 243 - -
Gso3g1055 938 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12 937 - -
Gso3g1055 938 Gene3D Cysteine proteinases 308 544 - -
Gso3g1055 938 Gene3D - 9 156 IPR035927 -
Gso3g1055 938 Pfam Ubiquitin carboxyl-terminal hydrolase 320 924 IPR001394 GO:0004843|GO:0016579
Gso3g1055 938 SUPERFAMILY DUSP-like 15 143 IPR035927 -
Gso3g1055 938 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 869 886 IPR018200 GO:0004843|GO:0006511
Gso3g1055 938 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 320 927 IPR028889 -
Gso3g1055 938 SMART dusp 33 146 IPR006615 GO:0004843
Gso3g1055 938 ProSiteProfiles DUSP domain profile. 14 143 IPR006615 GO:0004843
Gso3g1055 938 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 321 336 IPR018200 GO:0004843|GO:0006511
Gso3g1055 938 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 12 937 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1055 Gso-Chr3 35449397 35460262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1055 780 929 Miscellaneous Gene Families AT4G31670 33.987 6.43e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1055 - - gmx:100785944 1867.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1062 19 38409651 38422435 Gso3g1055 3 35449397 35460262 GST