Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso3g0946 | ATGAAAAGGCTAAACTTTATAAACCCTATCTTATCCCCCATTTGTGGAAGAACCAATAACCACCGTGCCGGAATCATGGGAATCCTCGCCTTGCCCTTAGTGATCTCCGTTCTCAAACCCCACACCGCCACGCGCCTCCGCCCCTCACACTCCCTCCTCCACCGCCACCGCCACTTCGCCACCACCCTCTCCGCCGCCACCACTCCCTCTTCTCCTCATTCTCCTTCACCTTCACTCTCACGCCACTCTTCTTCTTATTCTTCTTCTTCAAGCCACTCCAACACTCGTTCCATTAATTCCTCAACTCTCACTTTTCAGCAAGCAATTCAACGCCTTCAGGAATATTGGGCTTCCGTTGGATGCTCCATAATGCAATGCAGCAACACAGAGGTTGGAGCTGGGACTATGAATCCTCTTACATATTTAAGGGTTCTTGGCCCTGAACCATGGAATGTCGCGTATGTGGAACCTAGCATCCGCCCTGATGATAGTCGATATGGAGAAAACCCAAATAGGCTCCAAAGACACACTCAATTTCAGGTGATATTGAAGCCTGATCCTGGAAATTCGCAGGATCTATTTATTCGCAGCCTCTCTGCTTTAGGTATTGATGTTACCGCACATGATATACGGTTTGTGGAAGACAACTGGGAGAGTCCGGTTCTTGGTGCTTGGGGTTTGGGCTGGGAAATCTGGATGGATGGGATGGAGATTACACAATTCACCTACTTTCAGCAGGCTGGAAGTCTCCAGTTATCACCTGTATCTGTAGAAATTACTTATGGCCTTGAGCGTATCCTCATGTTACTGCAGGGGGTTGATCACTTCAAGAAGATCAAATATTCTGATGGAATTACATATGGAGAGTTGTTCTTGGAGAATGAGAAGGAAATGAGTGCATATTACTTGGAGCATGCTAGTGTTGATCACGTTCAAAAACATTTTGATTTTTTCGAGGAGGAAGCTCGTAGCTTACTTTCTTCTGGCCTTGCAATACCTGCGTATGATCAGCTTCTGAAAACATCTCATGCTTTTAATATCCTAGACTCCAGAGGCTTTGTTGGAGTAACAGAGCGTGCTCGATATTTTGGTCGCATGCGTAGTTTAGCTCGCCAGTGTGCACAACTTTGGTTGAAGACAAGAGAGATGCTTGACTTTCCCCTTGGTTTTATCTCTGAACCTGATCATTTTGTATTGCCAAAAGAAGTTTTGGAGGCTGCATGTGAGAAGGTGCATGATCATTCAAGAGCATTTGTTCTTGAAATTGGGACTGAAGAGATGCCACCTCAAGATGTTGTTGATGCAAGCAAGCAACTGAAAGATTTATTGCTGCAACTGCTTGAACGGCAAAGGTTAAACCATGGTGAAGTGCAAGCTTTTGGCACCCCACGTAGATTAGTGGTTGCTGTTGAAAATCTTTGCACCAAACAGGCAGAAAAGGAGGTTGAAGTTAGAGGTCCTCCTGTTTCAAAAGCATTTGATCATGAGGGAAATCCAACAAAGGCCATTGAGGGTTTTTCTCGTAGATACTCTGTTCCACTTGATCTGGTATACAGAAAGGTTGATGGGAAAACGGAATATGTTTATGCACGTATAAAGGAGTCTTCAAGACATGCTTTGGAGGTTTTGTCTGAAGATTTGCCTGCTACTATTGCTAAAATTTCATTTCCAAAGACAATGCGTTGGAATTCTCAGGTTATGTTTAGCAGGCCTATCCGTTGGATTTTGGCCCTGCATGGAGATGTAGTAGTCCCATTTATGTTTGCTGGGGTGACGAGTGGAAACTTGTCCTTTGGTCTTCGTAATACTTCTTCAGCTGTTATCCAGGTGGAAAGTGCAGAATCTTATTCAGTTTCAATAAAAAATGTGGGAATCAATGTTTCAGTTGAGGACCGTAAGAAAATTATTTTTGAGCAATCTAATGCATTAGCAGAAAGTGTAAATGGCCAAATTCTTATTCCAAAAGGTTTGCTTGACGAGGTTGTAAATCTTGTTGAGGCACCTTTTCCCGTGCTTGGAAAGTTTAAGGAAACCTTCTTAGATCTTCCAAAAGATCTTTTGACTATGGTTATGCAAAAGCATCAAAAGTATTTTGCTGTATGTGATGCTAATGGACAATTATTGCCTTATTTTGTTGCTGTTGCAAATGGAGCAATTGATGAGACTACAGTGAGGAAAGGAAATGAAGCTGTGCTCAGGGCTCGCTATGAAGATGCTAAGTTCTTTTATGAGATGGACACTCGTAAAAGGTTTTCAGAATTCCGAAAGCAACTGAAAAACATTCTCTTTCATGAGAAGCTTGGAACCATGCTGGATAAGATGACTCGTGTTGAAAACATGGTTACTAAACTAAGTTGCCTCCTAGATATCAATGAAGATGTGCAACAAATTATCCGGGATGCTTCCTCACTTGCTATGTCTGATCTTGCCACTGCAGTTGTCACTGAATTTACATCACTTTCAGGAATTATGGGGCGTCATTATGCCCTTAGAGATGGATACTCAGAGCAGATTGCAGAGGCCTTGCTGGAGATCACACTTCCTAGATTTTCTGGGGACATACTTCCCAAAAGTGATGCTGGCATAGTTTTGGCAATTGCTGATAGATTAGATAGCCTGCTAGGTTTATTTACTGCTGGTTGTCAACCTAGCTCCACAAATGACCCGTTTGGTCTTCGAAGAATTTCATATGGTCTTGTGCAACTATTGGTGGAAAAGAATAAAAATCTAGATTTTAAGAAGGCCCTAGAACTTGCTGCAGATGTCCAGTCCATTAAAGTAGATCCTCATGTAATAGATGATGTGCATCAATTTGTTACACGAAGATTAGAGCAATTTCTGGTTGACAAGGGGGTGAATGCAGAATTTGTTCGATCGATCCTTGTAGAAAGAGCAAATTTTCCCTGTCTTGCAGCTAAATCAGCGTATAAAATGGAAGAATTATCTAAAGGGAACCTTTTCCCTAAAGTAGTTGAAGCATACTCCCGGCCAACAAGAATTGTCCGTGGGAAAGAAGATGAACTTCATATGGAGGTGGACGAGACTGCTTTTGTGACAAATGAAGAGAGAGTTTTATGGAGCACATTTTTGTCAGTCAAAAAGAGTGTCAATCCTGGTCTTGGCATCGATGATTTTGTAGAAATTTCATGTCAGTTAATACAGCCGCTTGAGGATTTCTTCAATAATGTCTTTGTAATGGTGGACGATGACAAGATCAGAGTAAACAGGTTAGCTCTGCTAAAAGGAATTGCTGAACTCCCTAAAGGAATAGCAGACCTTACTGTTCTGCCAGGATTTTAA | 3300 | 0.4233 | MKRLNFINPILSPICGRTNNHRAGIMGILALPLVISVLKPHTATRLRPSHSLLHRHRHFATTLSAATTPSSPHSPSPSLSRHSSSYSSSSSHSNTRSINSSTLTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHASVDHVQKHFDFFEEEARSLLSSGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTREMLDFPLGFISEPDHFVLPKEVLEAACEKVHDHSRAFVLEIGTEEMPPQDVVDASKQLKDLLLQLLERQRLNHGEVQAFGTPRRLVVAVENLCTKQAEKEVEVRGPPVSKAFDHEGNPTKAIEGFSRRYSVPLDLVYRKVDGKTEYVYARIKESSRHALEVLSEDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFMFAGVTSGNLSFGLRNTSSAVIQVESAESYSVSIKNVGINVSVEDRKKIIFEQSNALAESVNGQILIPKGLLDEVVNLVEAPFPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCDANGQLLPYFVAVANGAIDETTVRKGNEAVLRARYEDAKFFYEMDTRKRFSEFRKQLKNILFHEKLGTMLDKMTRVENMVTKLSCLLDINEDVQQIIRDASSLAMSDLATAVVTEFTSLSGIMGRHYALRDGYSEQIAEALLEITLPRFSGDILPKSDAGIVLAIADRLDSLLGLFTAGCQPSSTNDPFGLRRISYGLVQLLVEKNKNLDFKKALELAADVQSIKVDPHVIDDVHQFVTRRLEQFLVDKGVNAEFVRSILVERANFPCLAAKSAYKMEELSKGNLFPKVVEAYSRPTRIVRGKEDELHMEVDETAFVTNEERVLWSTFLSVKKSVNPGLGIDDFVEISCQLIQPLEDFFNNVFVMVDDDKIRVNRLALLKGIAELPKGIADLTVLPGF* | 1100 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso3g0946 | 1099 | MobiDBLite | consensus disorder prediction | 62 | 99 | - | - | |
| Gso3g0946 | 1099 | CDD | GlyRS_alpha_core | 104 | 382 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Gso3g0946 | 1099 | TIGRFAM | glyS: glycine--tRNA ligase, beta subunit | 415 | 1096 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Gso3g0946 | 1099 | Gene3D | Bira Bifunctional Protein; Domain 2 | 89 | 306 | IPR045864 | - | |
| Gso3g0946 | 1099 | Hamap | Glycine--tRNA ligase alpha subunit [glyQ]. | 103 | 383 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Gso3g0946 | 1099 | PANTHER | GLYCYL-TRNA SYNTHETASE | 414 | 1099 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Gso3g0946 | 1099 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 772 | 1061 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Gso3g0946 | 1099 | SUPERFAMILY | HD-domain/PDEase-like | 745 | 879 | - | - | |
| Gso3g0946 | 1099 | Pfam | Glycyl-tRNA synthetase beta subunit | 418 | 961 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Gso3g0946 | 1099 | Pfam | Glycyl-tRNA synthetase alpha subunit | 105 | 382 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Gso3g0946 | 1099 | SUPERFAMILY | Class II aaRS and biotin synthetases | 104 | 382 | IPR045864 | - | |
| Gso3g0946 | 1099 | Gene3D | Class II aaRS and biotin synthetases; domain 2 | 307 | 387 | - | - | |
| Gso3g0946 | 1099 | TIGRFAM | glyQ: glycine--tRNA ligase, alpha subunit | 104 | 388 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Gso3g0946 | 1099 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 157 | 172 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Gso3g0946 | 1099 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 178 | 198 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Gso3g0946 | 1099 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 209 | 233 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Gso3g0946 | 1099 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 235 | 255 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Gso3g0946 | 1099 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 258 | 273 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Gso3g0946 | 1099 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 343 | 359 | IPR002310 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Gso3g0946 | 1099 | Coils | Coil | 1099 | 1099 | - | - | |
| Gso3g0946 | 1099 | Hamap | Glycine--tRNA ligase beta subunit [glyS]. | 415 | 1096 | IPR015944 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 | |
| Gso3g0946 | 1099 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 104 | 378 | IPR006194 | GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso3g0946 | Gso-Chr3 | 33323489 | 33349149 | Proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso3g0946 | K14164 | - | gmx:100787365 | 2036.92 |