Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0925 ATGGCAGCAACAACAGAGAGCGAGAAGAAGAAGCAAGAAGAAGAAGAGGTACAAGAACAAGTGGTGAACCCATGGGAAGTTTCCGCCAAAGGCAAAATCGATTACGACAAACTCATTGACCGTTTCGGTTGCCAGAAGCTCGACGAAGCCCTAATTTCGCGTCTCGAGCGCATCACCTCTCGCACTCCCCACGTCTTTCTACGACGCGGCGTTTTCTTCGCCCACCGCGATTTCGCGGAGATTCTGGACGCGTATGAGAGGGGAGATAAGTTCTACTTGTACACCGGACGCGGACCTTCCTCTGAAGCCTTGCATTTGGGACACTTGATTCCCTTCATGTTCACTAAGTATTTGCAAGATGTGTTTAAGGTTCCTTTGGTTATACAGCTCACTGATGATGAGAAGTTCTTCTGGAAAAATCTTTCTATAGACGAGTGCCGAAGACTTGCAAGGGAGAATGCAAAGGACATCATTGCTTGTGGTTTTGACATTTCAAAGACATTCATCTTCTCTGATTTCAATTATGTTGGCGGTTCCTTCTACAAGAACATGTGTGAGGTTGGGAAGCGTGTGACTTATAACCAGGCTGTCGGCATATTTGGTTTTGTTGGTGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGGCAGTTCCATCATTTCCTAGTTCGTTTCCTCACCTATTTTCTGGAAAAGAGAATCTTCGTTGTTTAATTCCTTGTGCAATTGACCAGGATCCATATTTTAGAATGACACGTGATGTTGCTCCTAAAATGGGTTTCCACAAGCCAGCCTTGATTGAATCATTATTCTTCCCAGCATTACAGGGGGAAACAGGAAAAATGTCTGCCAGTGATCCCAATTCTGCAATATATGTGACCGATTCTGCAAAAGATATAAAGAACAAGGTAAACAAACATGCGTTTTCTGGTGGGCAAGATTCTATAGAGAAACATAGGCAATTAGGAGCAAATCTTGAGGTAGATATACCAGTCAAATACCTTACTTTTTTCCTAGAAGATGATGATGAACTTGAACACATAAAGAAGGAATATGGAGAAGGGCGCATGCTAACTGGTGAGGTAAAGCAGCGGCTAATTCAAGTTTTGACTGAACTAGTGGAGAGGCATCGCAGAGCTCGGGCTTCTGTGACTGAAGAGATGGTGGATGCATTTATGGCTATCAGACCACTTCCCCACATGTTTGACTGA 1215 0.4379 MAATTESEKKKQEEEEVQEQVVNPWEVSAKGKIDYDKLIDRFGCQKLDEALISRLERITSRTPHVFLRRGVFFAHRDFAEILDAYERGDKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDVFKVPLVIQLTDDEKFFWKNLSIDECRRLARENAKDIIACGFDISKTFIFSDFNYVGGSFYKNMCEVGKRVTYNQAVGIFGFVGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKENLRCLIPCAIDQDPYFRMTRDVAPKMGFHKPALIESLFFPALQGETGKMSASDPNSAIYVTDSAKDIKNKVNKHAFSGGQDSIEKHRQLGANLEVDIPVKYLTFFLEDDDELEHIKKEYGEGRMLTGEVKQRLIQVLTELVERHRRARASVTEEMVDAFMAIRPLPHMFD* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0925 404 Gene3D HUPs 7 285 IPR014729 -
Gso3g0925 404 PANTHER TRYPTOPHANYL-TRNA SYNTHETASE 6 404 - -
Gso3g0925 404 MobiDBLite consensus disorder prediction 1 20 - -
Gso3g0925 404 PANTHER BNAA01G33520D PROTEIN 6 404 - -
Gso3g0925 404 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 99 109 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gso3g0925 404 Gene3D - 286 403 - -
Gso3g0925 404 SUPERFAMILY Nucleotidylyl transferase 19 397 - -
Gso3g0925 404 Pfam tRNA synthetases class I (W and Y) 244 374 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gso3g0925 404 TIGRFAM trpS: tryptophan--tRNA ligase 90 394 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gso3g0925 404 CDD TrpRS_core 92 374 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gso3g0925 404 MobiDBLite consensus disorder prediction 1 18 - -
Gso3g0925 404 PRINTS Tryptophanyl-tRNA synthetase signature 104 120 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gso3g0925 404 PRINTS Tryptophanyl-tRNA synthetase signature 156 175 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gso3g0925 404 PRINTS Tryptophanyl-tRNA synthetase signature 238 259 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gso3g0925 404 PRINTS Tryptophanyl-tRNA synthetase signature 282 292 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0925 Gso-Chr3 32857004 32864140 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0925 K01867 - gmx:100787194 788.875