Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0872 ATGGCGATGCTGTTGAAGCACGTGAGGAACTCGTCGTCGCTGCTGAAGCGCCACGTGACCGCCGCGCACTTGCTGCTGTCGCGGCCCTTCACCACCACCGAAGGCCACCGCCCCTCCATCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAAGGGACAGCTTTTTCCATGACAGAACGAGATCGTCTTGATCTACGAGGACTGCTTCCTCCAAATGTTATGTCTCCTGACCTACAGATTGAACGATTCATGGTTGATCTGAAGAGGCTTGAAGTTCAAGCTAGAGATGGACCTTCTGATCCTAATGCATTGGCCAAGTGGCGGATACTTAACCGCTTGCATGACAGAAATGAGACTATGTACTATAAGGTTTTGATTGCCAAAATAGAGGAATATGCACCAATAGTGTATACTCCAACAGTGGGTCTTGTATGTCAGAACTATAGTGGACTGTTTAGAAGACCAAGAGGAATGTACTTCAGTGCTGAGGATCGTGGAGAAATGATGTCTATGGTGTATAACTGGCCAGCTGAGCAGGTTGATATGATTGTAGTTACTGATGGGAGCAGAATCTTGGGACTTGGAGATCTTGGAGTTCAAGGAATTGGCATTGCCATTGGGAAGCTTGATCTATATGTTGCTGCTGCTGGGATAAATCCTCAAAGGGTACTTCCGGTGATGATTGATGTTGGTACTAATAATGAGAAGTTACTCGAAGATCCCTTATATTTGGGATTGCAGCAGCATCGTCTTGATGGGGATGATTATCTTGCTGTAGTTGATGAATTTATGGAGGCTGTCTTTACTCGCTGGCCAAATGTGATTGTGCAGTTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAGGGAACAGCTGGAGTTGCAATTGCTGGACTTCTAGGTGCTGTACGGGCGCAAGGAAGACCATTGATTGACTTCCCAAAGCAGAAGATTGTTGTTGCTGGTGCTGGAAGTGCTGGAATTGGGGTTCTTAATGCAGCGAGAAAAACAATGGCAAGGATGTTGGGTAATAATGAAGTAGCTTTTGAGAGCGCAAAGAGTCAGTTTTGGGTTGTTGATGCACAGGGATTAATCACAGAAGGACGTGAAAATATTGATCCAGATGCCGTTCCTTTTGCAAGAAATTTGAAAGAAATGGATCGCCAAGGACTGAGGGAAGGAGCAAGCCTCGTGGAAGTGGTCAAGCAAGTGAAGCCTGACGTTCTCCTAGGATTATCGGCTGTTGGAGGATTATTCTCAAAAGAGGTACTAGAGGCCCTCAAGGGTTCAACATCAACCAGACCAGCCATATTTGCTATGTCAAATCCAACAAAGAATGCTGAATGCACCGCTGAAGAAGCATTCTCCATTTTGGGTGACAACATTATTTTTGCAAGTGGAAGTCCATTCAGTAATGTGGATCTTGGAAATGGTCATATTGGCCATTGCAACCAGGGAAACAACATGTACCTCTTTCCAGGCATTGGTCTCGGAACTCTTCTTTCAGGCGCTAGGATCGTCTCTGATGGCATGCTGCAGGCTGCAGCTGAGCGTCTGGCTACATACATGAGTGAAGAGGAGGTACTCAAAGGAATTATTTTCCCTTCAACATCCAGAATTCGAGATATTACAAAGCAGGTAGCCACAGCTGTTATAAAAGAAGCAGTGGAGGAGGACCTAGCTGAAGGATATCATGGAATGGATGCTCGGGAGCTGCAGAAACTAAGCGAGGATGAAATCGCGGAATATGTGCAGAATAACATGTGGAGTCCAGAGTACCCTACATTAGTTTACAAGAAAGAATGA 1869 0.4537 MAMLLKHVRNSSSLLKRHVTAAHLLLSRPFTTTEGHRPSIVHKRSLDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMSPDLQIERFMVDLKRLEVQARDGPSDPNALAKWRILNRLHDRNETMYYKVLIAKIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQRVLPVMIDVGTNNEKLLEDPLYLGLQQHRLDGDDYLAVVDEFMEAVFTRWPNVIVQFEDFQSKWAFKLLQRYRNTYRMFNDDVQGTAGVAIAGLLGAVRAQGRPLIDFPKQKIVVAGAGSAGIGVLNAARKTMARMLGNNEVAFESAKSQFWVVDAQGLITEGRENIDPDAVPFARNLKEMDRQGLREGASLVEVVKQVKPDVLLGLSAVGGLFSKEVLEALKGSTSTRPAIFAMSNPTKNAECTAEEAFSILGDNIIFASGSPFSNVDLGNGHIGHCNQGNNMYLFPGIGLGTLLSGARIVSDGMLQAAAERLATYMSEEEVLKGIIFPSTSRIRDITKQVATAVIKEAVEEDLAEGYHGMDARELQKLSEDEIAEYVQNNMWSPEYPTLVYKKE* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0872 622 CDD NAD_bind_1_malic_enz 309 612 - -
Gso3g0872 622 SMART Malic_M_2 309 577 IPR012302 GO:0051287
Gso3g0872 622 Gene3D - 43 306 IPR037062 GO:0004471
Gso3g0872 622 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 26 308 IPR046346 -
Gso3g0872 622 Pfam Malic enzyme, N-terminal domain 119 299 IPR012301 GO:0004471
Gso3g0872 622 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 309 618 IPR036291 -
Gso3g0872 622 Gene3D - 307 622 - -
Gso3g0872 622 PIRSF ME 7 620 IPR001891 GO:0004470|GO:0004471
Gso3g0872 622 Pfam Malic enzyme, NAD binding domain 309 577 IPR012302 GO:0051287
Gso3g0872 622 ProSitePatterns Malic enzymes signature. 305 321 IPR015884 GO:0004471
Gso3g0872 622 PANTHER MALIC ENZYME 20 618 - -
Gso3g0872 622 PANTHER MALIC ENZYME-RELATED 20 618 - -
Gso3g0872 622 PRINTS Malic enzyme signature 125 149 IPR001891 GO:0004470|GO:0004471
Gso3g0872 622 PRINTS Malic enzyme signature 185 214 IPR001891 GO:0004470|GO:0004471
Gso3g0872 622 PRINTS Malic enzyme signature 221 243 IPR001891 GO:0004470|GO:0004471
Gso3g0872 622 PRINTS Malic enzyme signature 280 298 IPR001891 GO:0004470|GO:0004471
Gso3g0872 622 PRINTS Malic enzyme signature 305 321 IPR001891 GO:0004470|GO:0004471
Gso3g0872 622 PRINTS Malic enzyme signature 339 355 IPR001891 GO:0004470|GO:0004471
Gso3g0872 622 PRINTS Malic enzyme signature 453 469 IPR001891 GO:0004470|GO:0004471
Gso3g0872 622 SMART malic_2 119 299 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0872 Gso-Chr3 31457142 31475910 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0872 K00028 - gmx:100799344 1211.05