Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0835 ATGGCTAACTCGGCTTGTTCCACGTCCACTATGGACCGCATCGAAGTAGCCATCGTGGAACTCACCGCTGCCCAAGACGCCATTGCCACCAAATTGGACAAACTTCTTCCGCTGTTGGCCCTTTTTGAGACCACTCAACACTCCTCATCTTTTCCCTCTGCGAAGTCACCACCATTAGCTGGAACCATGCCGACTCCACTTCCCATGGTAACCAGCCAACACTCCCTGCAAATGACTACACCACCTAGGTCTCCTCCTTTTTCTCCTCCTCCTCCTATTGATGCAACATCACATTCCCCTCCTACCTTAAAGCGGACAAGAAAAGCCACAGGCTTGAGATCATTAGCTGCTACTAGACCAGTTGGGGCAGAGAGACCCCTGGTCCATGTGGATCCTACAACTGGGAAAGCCGACGCTGACAAGGACAGTGTCGATGACATTGTATGCGAAAAGTATGACATTAACAAGGAGAAGTGGACCCAATTTTGTCAGAGTCGCAGAGACCCTTTGTGGGAGGATGTGCAAAAGAAGGCACAGGATTCGTTGGAGGATCATGCCTCACAAGGTTCCTTTGTCGCCCATGGACATCAGGATGTATTGACTGTTGCCATTGGGCGACAAGAACACCCTGGTCGTGTGCATGCTGTTGGAGTTGGTCCTTCAGCTGCTCGTGTCAACATAAAGGAGAGCTATGTTTATCCCTCAAGCAACGACCCATACACGGGTGACTCAGAGAAATACGGGTTATACGTTGAAGAAAACCTTCCCCGCCTGGTTGCCCTAGGAAGACTTTATGAGGGATCCACAACCGTTCACAACATGTCTTTGCGCCATGATCAACTCAAGGTTGGTGTTGAGGAAGTTAGAGATGTAGATGCTCTCATTCCTATACCCACTCAAAAGGGAGTTCTGGGACCAACGAAACCTATAGATAGGCCGGATCATGATGTCGATGATCCTCTATATCTAATGACATTGACCATCCCACAGCTTTTTCTAAAGCCGTTGCAGGTTATGTGGGATGCTATCGTGTTTGGGATGTTTAATGACGACTTCCCCTTGCTAATAATGACTTGTGTTTTGATTATTGGTTTTGTTTCACCATGTTTATGTTTGAGGTCGATGGTTGGAACCAAAAACACATTTTATAATGTGATGGACTTTGGTGCTCATGGCAATGGGAAATCTGATGATTCTCATGCATTTTCAAGCGCATGGCAACACACATGTGGAACACAAGGGACATCAACTCTAGTTATACCACCAAAAGGAGTATTCTTGGTGTCGAACATAACCCTGAAAGGACCTTGCAAGGCCAGAAGTCTGGATCCTTTGATTTTGATCTCAAACCTAAACGGTCTCACGATTGATGGAAGCGGAGGACAAATCGATGGCTTCGGTTCTACTTGGTGGAAATGCAGAAGTTGTCTTCGACCAAGGGTCATTAGTTTTGTATCTTGCAATGATCTTACTGTTCGTAAACTGAGCATCTCCAATAGTCCAAGAGCTCACATAACGATTGATGGTTGTAACGGTGCCATATTCTCTAATATCAATATTCATGCTCCTAGGAACAGCCCCAACACTGATGGATTTGATATTGCTTTTTCCAAAAATATCTTGATCGAAGATTGTACTATAGCAACTGGCGATGATTGTATTGCCATCAATGGAGGCTCCTCATACATCAATGCTACTGGAATTGCTTGTGGTCCTGGCCATGGAATAAGCATTGGCAGCCTGGGTAAACACAACGCTCATGAAACAGTGGAAGAAATTTATGTATACAATTGCAGTTTCACCAAAACAACAAATGGAGCAAGAATCAAGACAGTTCCGGGTGGAACAGGTTATGCAAAAAGAATCACGTTTGAGAAAATCAAATTAATACAGACTCGCAACCCAATAATTTTAGACCAATTCTATCATAGTGTTCACTTAACGGTGACATACCGTGGGTTTCAAGGAACATCTGCGAATGACAAAGCTATTAACTTAGATTGTGGCCCATCAGGTTGTTTTAACATTGTATTGGATCAAATTGACATTGTCTCTTCTGATACATCAAAACCGGCTCATTGTTCATGCAATAATGCCCATGGAACAACTACATCTACTGTTCCAAATTGCTCTTGTCTATTGAAATGA 2148 0.4437 MANSACSTSTMDRIEVAIVELTAAQDAIATKLDKLLPLLALFETTQHSSSFPSAKSPPLAGTMPTPLPMVTSQHSLQMTTPPRSPPFSPPPPIDATSHSPPTLKRTRKATGLRSLAATRPVGAERPLVHVDPTTGKADADKDSVDDIVCEKYDINKEKWTQFCQSRRDPLWEDVQKKAQDSLEDHASQGSFVAHGHQDVLTVAIGRQEHPGRVHAVGVGPSAARVNIKESYVYPSSNDPYTGDSEKYGLYVEENLPRLVALGRLYEGSTTVHNMSLRHDQLKVGVEEVRDVDALIPIPTQKGVLGPTKPIDRPDHDVDDPLYLMTLTIPQLFLKPLQVMWDAIVFGMFNDDFPLLIMTCVLIIGFVSPCLCLRSMVGTKNTFYNVMDFGAHGNGKSDDSHAFSSAWQHTCGTQGTSTLVIPPKGVFLVSNITLKGPCKARSLDPLILISNLNGLTIDGSGGQIDGFGSTWWKCRSCLRPRVISFVSCNDLTVRKLSISNSPRAHITIDGCNGAIFSNINIHAPRNSPNTDGFDIAFSKNILIEDCTIATGDDCIAINGGSSYINATGIACGPGHGISIGSLGKHNAHETVEEIYVYNCSFTKTTNGARIKTVPGGTGYAKRITFEKIKLIQTRNPIILDQFYHSVHLTVTYRGFQGTSANDKAINLDCGPSGCFNIVLDQIDIVSSDTSKPAHCSCNNAHGTTTSTVPNCSCLLK* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0835 715 MobiDBLite consensus disorder prediction 66 81 - -
Gso3g0835 715 MobiDBLite consensus disorder prediction 82 97 - -
Gso3g0835 715 ProSitePatterns Polygalacturonase active site. 567 580 IPR000743 GO:0004650|GO:0005975
Gso3g0835 715 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 356 713 - -
Gso3g0835 715 Pfam Glycosyl hydrolases family 28 446 700 IPR000743 GO:0004650|GO:0005975
Gso3g0835 715 Gene3D - 373 712 IPR012334 -
Gso3g0835 715 PANTHER - 356 713 - -
Gso3g0835 715 MobiDBLite consensus disorder prediction 46 112 - -
Gso3g0835 715 SMART pbh1 510 536 IPR006626 -
Gso3g0835 715 SMART pbh1 222 253 IPR006626 -
Gso3g0835 715 SMART pbh1 537 558 IPR006626 -
Gso3g0835 715 SMART pbh1 590 611 IPR006626 -
Gso3g0835 715 SUPERFAMILY Pectin lyase-like 376 713 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0835 Gso-Chr3 30349572 30364993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0835 352 704 Glycoside Hydrolase AT5G27530 42.674 1.23e-87 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0835 K01184 - gmx:100782390 1110.13