Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso3g0813 | ATGGAGTTCAGTTTCGATGAGAAGGACTTTGTGTCGTGCTGCGGGAGCACTAAATTCGCGAAGGAAATGGCTTCGGCCTCTCCTTTCGGTTCGTTGCAGGACGCTGTTTCTGTTGCCAGAGACGTTTGGTTCAACAGCGTTGATGTCAATGGTTGGCTTCAGGCCTTCTCTGCGCACCCTCAGATCGGTCAAAGCCACGCTCCCTCTGTTGCCTCTGAAGCCAGTGCTCAGTGGAGTAAGGGAGAGCAATCAACTGCTTTAGCAACTGCTACTGGTTCGAGCTTACAGGAACTATCTGAATGGAATGCTCGGTACAGGGAAAAGTTTGGGTTTGTATTTCTCATTTGTGCAGCTGGGAGAAGTACTGATGAGATACTTGCTGAACTGAAGAGACGTTATACAAACAGGCCAATTGTTGAATTTGAGATTGCTGCTCGGGAGCAAATGAAAATTACAGAACTACGCCTTGCAAAGCTCTTTTCAAGTAGAGAAAACATTTCTTCTACAGCTGATAAGAATTCCACTGCTAGAAAGGCAGAAGAAGATCGTATAAGCATTATCAGTAGTCACATGACTGCTACTTCAGAGAGTTCAACAGGCAAATCAATTCAGCATCCTGCCAGAACCCGCCCTCCCATTACCACTCACGTGTTGGATGTTTCGCGGGGGGCTCCAGCTGCTGGTATTGATGTACTTCTGGAGGTGTGGAGGGGCACTCAGTCTCAGCCAACATTTGGGGCCACAGGCGGTGGCAGTTGGGTGTTCCAAGGGTCTTCAAAGACGGATTCGGATGGCCGCAGTGGTCAACTGTTGAGCATAGTCGATGAAGCGAGTCCAGGGATATACAGGATAAGTTTCAACACTGGGAAGTACATCCCAAATGGTTTCTTTCCTTATGTGTCTATAGTGTTTGAAATCAAAGAGTCACAAAAAAGGGAACATTTTCATGTTCCTCTCCTACTTTCACCGTTCTCATTCAGCACTTACCGTGGAAGCTAG | 999 | 0.4735 | MEFSFDEKDFVSCCGSTKFAKEMASASPFGSLQDAVSVARDVWFNSVDVNGWLQAFSAHPQIGQSHAPSVASEASAQWSKGEQSTALATATGSSLQELSEWNARYREKFGFVFLICAAGRSTDEILAELKRRYTNRPIVEFEIAAREQMKITELRLAKLFSSRENISSTADKNSTARKAEEDRISIISSHMTATSESSTGKSIQHPARTRPPITTHVLDVSRGAPAAGIDVLLEVWRGTQSQPTFGATGGGSWVFQGSSKTDSDGRSGQLLSIVDEASPGIYRISFNTGKYIPNGFFPYVSIVFEIKESQKREHFHVPLLLSPFSFSTYRGS* | 333 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso3g0813 | 332 | PRINTS | Transthyretin signature | 212 | 232 | IPR000895 | - | |
| Gso3g0813 | 332 | PRINTS | Transthyretin signature | 310 | 332 | IPR000895 | - | |
| Gso3g0813 | 332 | PANTHER | 5-HYDROXYISOURATE HYDROLASE | 1 | 332 | - | - | |
| Gso3g0813 | 332 | TIGRFAM | hdxy_isourate: hydroxyisourate hydrolase | 212 | 332 | IPR014306 | GO:0006144|GO:0033971 | |
| Gso3g0813 | 332 | ProSitePatterns | Transthyretin signature 2. | 315 | 327 | IPR023419 | - | |
| Gso3g0813 | 332 | ProSitePatterns | Transthyretin signature 1. | 216 | 231 | IPR023418 | - | |
| Gso3g0813 | 332 | Pfam | OHCU decarboxylase | 11 | 157 | IPR018020 | - | |
| Gso3g0813 | 332 | PANTHER | URICASE AND TRANSTHYRETIN-RELATED | 1 | 332 | IPR023416 | - | |
| Gso3g0813 | 332 | Pfam | HIUase/Transthyretin family | 213 | 331 | IPR023416 | - | |
| Gso3g0813 | 332 | MobiDBLite | consensus disorder prediction | 189 | 209 | - | - | |
| Gso3g0813 | 332 | Gene3D | - | 6 | 163 | IPR036778 | - | |
| Gso3g0813 | 332 | SUPERFAMILY | Transthyretin (synonym: prealbumin) | 206 | 332 | IPR036817 | - | |
| Gso3g0813 | 332 | SUPERFAMILY | UraD-Like | 12 | 161 | IPR036778 | - | |
| Gso3g0813 | 332 | CDD | TLP_HIUase | 211 | 332 | IPR014306 | GO:0006144|GO:0033971 | |
| Gso3g0813 | 332 | Gene3D | Transthyretin/hydroxyisourate hydrolase domain | 202 | 330 | IPR036817 | - | |
| Gso3g0813 | 332 | MobiDBLite | consensus disorder prediction | 247 | 267 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso3g0813 | Gso-Chr3 | 29396141 | 29401420 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso3g0813 | K13484 | - | gmx:100805930 | 659.448 |