Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0230 ATGGCTGGTGAATCTGATGTACCGGAAAACACCCTCTCTTGTGCTAATTGTGGCAAACCTGCGAAGCTTCAGTGTCCAAAATGTATGGAATTGAAGCTTCCTCGAGAAGGTGCTGCCTTCTGCTCTCAGGATTGTTTCAAGTCTTCATGGAACTCTCACAAATCAGTGCATCTGAAGGCAAAACTATCCTCACCTGGCACACAAAATTCAGACTCACTTGGTGATGGTTGGTTATATTGTTTGAAGAGAGGGCAGGCTCGAACACCAAAGCTTCCTCACTTTGATTGGACTGGACCACTGCAACCATATCCCATTTCTAGTAAACGGATAGTCCCAGATCAAATTGATAAACCTGATTGGGCTGATGATGGAACCCCCAAAATTGAGCCCAATAGTAGTCTACAGCATACTGTTGAGGTCAAAACTCCAGATCAAATTGAGAGAATGAGGGAAACTTGTCGGATTGCAAGGGAAGTGTTGGATGCAGCTGCTCGGATTATTCAGCCTGGTGTGACGACTGATGAGATTGACAGAGTTGTTCATGAGGCAACTATTGCTGCAGGAGGATATCCATCACCTCTCAATTACCTTTTCTTCCCTAAATCTTGCTGCACGTCAGTTAATGAAGTAATCTGCCATGGAATTCCTGATGCAAGGAAGCTTGAGGATGGTGACATTGTAAATGTTGATGTCACTGTGTACTATAAAGGTGTTCATGGTGATCTCAATGAAACATACTTTGTGGGAAATGTTGATGAAGAGTCTCGCCAACTAGTAAAATGCACATATGAGTGCCTGGAGAAGGCAATATCCATTGTTAAACCTGGGGTACGATTCCGTGAAATTGGTGAAGTTATTAATCGTCATGCTTCAATGTCTGGCTTTTCAGTGGTAAAATCATATTGTGGTCATGGAATTGGAGAGCTCTTCCATTGTGCACCTAACATTCCTCATTATTCAAGAAATAAAGCAGTTGGTGTGATGAAGGCCGGACAGACCTTTACAATTGAACCTATGATCAATGCCGGTGTCTGGCGGGATCGAATGTGGCCTGATGGATGGACTGCTGTTACAGCAGATGGTAAACGAAGTGCTCAATTTGAGCAGACTCTTTTGGTGACAGAGACTGGTGTTGAAGTTTTAACAGGGAGGTTGCAGACATCACCCAATGTTTTTCCTTGGTTAAATTCATAA 1194 0.433 MAGESDVPENTLSCANCGKPAKLQCPKCMELKLPREGAAFCSQDCFKSSWNSHKSVHLKAKLSSPGTQNSDSLGDGWLYCLKRGQARTPKLPHFDWTGPLQPYPISSKRIVPDQIDKPDWADDGTPKIEPNSSLQHTVEVKTPDQIERMRETCRIAREVLDAAARIIQPGVTTDEIDRVVHEATIAAGGYPSPLNYLFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGVHGDLNETYFVGNVDEESRQLVKCTYECLEKAISIVKPGVRFREIGEVINRHASMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKAGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEQTLLVTETGVEVLTGRLQTSPNVFPWLNS* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0230 397 Gene3D Creatinase/methionine aminopeptidase superfamily 94 393 IPR036005 -
Gso3g0230 397 Gene3D - 4 61 - -
Gso3g0230 397 PANTHER METHIONINE AMINOPEPTIDASE 12 390 - -
Gso3g0230 397 PANTHER METHIONINE AMINOPEPTIDASE 1 12 390 - -
Gso3g0230 397 SUPERFAMILY Creatinase/aminopeptidase 93 383 IPR036005 -
Gso3g0230 397 Pfam Metallopeptidase family M24 147 375 IPR000994 -
Gso3g0230 397 PRINTS Methionine aminopeptidase-1 signature 203 216 IPR001714 -
Gso3g0230 397 PRINTS Methionine aminopeptidase-1 signature 225 241 IPR001714 -
Gso3g0230 397 PRINTS Methionine aminopeptidase-1 signature 295 307 IPR001714 -
Gso3g0230 397 PRINTS Methionine aminopeptidase-1 signature 326 338 IPR001714 -
Gso3g0230 397 Hamap Methionine aminopeptidase [map]. 138 384 IPR002467 GO:0006508|GO:0070006
Gso3g0230 397 SUPERFAMILY HIT/MYND zinc finger-like 12 55 - -
Gso3g0230 397 Pfam zf-MYND-like zinc finger, mRNA-binding 15 58 IPR031615 -
Gso3g0230 397 ProSitePatterns Methionine aminopeptidase subfamily 1 signature. 301 319 IPR002467 GO:0006508|GO:0070006
Gso3g0230 397 CDD MetAP1 146 382 IPR002467 GO:0006508|GO:0070006
Gso3g0230 397 TIGRFAM met_pdase_I: methionine aminopeptidase, type I 139 383 IPR002467 GO:0006508|GO:0070006
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0230 Gso-Chr3 3130310 3137693 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0230 K01265 - gmx:100813779 832.787