Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0153 ATGGCGGACGACTCCGACCTCACCTCCCCGCTCCTCTCCTCCTCCTCCTCCTCCTCCTCCGACCACGTCGTCGTCACCGTCCACCCCTCCGCGGCGCCCCCCAGAAACCCCTTCCGTGTGCTCGGCACCGACGACGACGACGACGACGACCTCTCCGTGCCGCCGCCGTCCACCCTGGACCCGTTCCGCAACCGCACGCCGGCGATTGAGGGGCTCTACGAGTGGGCCAAGACGGTGCTGTGCCTGCCGCTGGCGGCGCTGCGGCTCGCGATCTTCGGGCTCTGCCTCGCGTTGGGGTACGTGGCGACGAAGGTGGCGCTGCAAGGGTGGAAGGACAAGGAGAATCCTATGCCCAAGTGGAGGTGTAGGGTTATGTGGATCACGCGCTTGTGCGCCAGATGTATTCTCTTCTCCTTTGGCTATCAGTGGATAAAACGGAAAGGAAAACCTGCACCAAGGGAAATTGCTCCAATAATTGTATCTAACCATGTTTCTTACATTGAGCCTATCTTCTATTTCTATGAATTATTTCCCACCATTGTGGCAGCTGAGTCCCATGACTCCATACCTTTTGTTGGCACCATTATTAGAGCAATGCAGGTCATATATGTTAACAGATTCTTACCATCATCAAGGAAGCAGGCTGTTAGGGAAATAAAGAGAAGGGCCTCTTGCAATAGATTTCCTCGAGTACTATTATTTCCCGAGGGAACAACAACAAATGGCAGGAACCTTATCTCCTTCCAACTTGGTGCATTTATCCCTGGATACCCAATCCAGCCTGTAATTGTACGCTATCCTCATGTGCACTTTGACCAATCCTGGGGTCATGTTTCTTTGGGAAAGCTTATGTTCAGAATGTTCACTCAATTTCACAACTTTTTTGAGGTAGAATATCTTCCTGTCATTTATCCCCTGGATGATAAGGAAACTGCTGTACATTTTCGGGAGAGGACTAGCCGGGATATTGCAACTGCACTGAATGCTGTCCAGACAGGACATTCTTATGGAGACATAATGCTTCATATGAAAGCACAAGAAGCAAAACAGGAGAACCCCTCAAGTTTTATGGTTGAAATGACCAAGGTGGAATCATTGTTTCATATTAGCAGCATGGAAGCTGTGGACTTTCTGGATAAATTCTTGGCCATGAATCCTGATTCCAGTGGTCGTGTTCAATATCATGACTTCTTGAGGGTTTTAAGACTTAAGGCTTGCCCACTATCTGCAAAGATATTTTCATTCATTGATGTAGAGAAGAGTGGGACAATTACGTTCAGACAGTTCTTGTATGGATCTGCCCATGTCATGTCACAACCAGGGTTCCATCAAGCCTGTGAAGAAGCCTTTGCTGGCTGTGGTGGTGCAGTAAAGGCCTATGTTGTTGAACAAGAGTTACGAGATTTCATCCAACCTGTTATCCTCAACTGGAGTGAGGATGAGGTCCATGAGCTTTTTATGGTATTTGACAATGATAATGATGGAAGAATTGACAAGAATGACTTTCTTTCATGCCTTAGAAAAACTCCTCTTCTCATAGCATTTTTTACACTTCAACTGCAGCAAAAGGAATTTGAAGGTAATGGAGTGATAGAAATAGTGTGA 1605 0.4754 MADDSDLTSPLLSSSSSSSSDHVVVTVHPSAAPPRNPFRVLGTDDDDDDDLSVPPPSTLDPFRNRTPAIEGLYEWAKTVLCLPLAALRLAIFGLCLALGYVATKVALQGWKDKENPMPKWRCRVMWITRLCARCILFSFGYQWIKRKGKPAPREIAPIIVSNHVSYIEPIFYFYELFPTIVAAESHDSIPFVGTIIRAMQVIYVNRFLPSSRKQAVREIKRRASCNRFPRVLLFPEGTTTNGRNLISFQLGAFIPGYPIQPVIVRYPHVHFDQSWGHVSLGKLMFRMFTQFHNFFEVEYLPVIYPLDDKETAVHFRERTSRDIATALNAVQTGHSYGDIMLHMKAQEAKQENPSSFMVEMTKVESLFHISSMEAVDFLDKFLAMNPDSSGRVQYHDFLRVLRLKACPLSAKIFSFIDVEKSGTITFRQFLYGSAHVMSQPGFHQACEEAFAGCGGAVKAYVVEQELRDFIQPVILNWSEDEVHELFMVFDNDNDGRIDKNDFLSCLRKTPLLIAFFTLQLQQKEFEGNGVIEIV* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0153 534 SUPERFAMILY EF-hand 360 520 IPR011992 -
Gso3g0153 534 MobiDBLite consensus disorder prediction 7 25 - -
Gso3g0153 534 Gene3D - 352 532 - -
Gso3g0153 534 SMART efh_1 481 509 IPR002048 GO:0005509
Gso3g0153 534 SMART efh_1 408 436 IPR002048 GO:0005509
Gso3g0153 534 SMART efh_1 376 404 IPR002048 GO:0005509
Gso3g0153 534 CDD EFh 411 503 IPR002048 GO:0005509
Gso3g0153 534 Pfam Acyltransferase 154 261 IPR002123 GO:0016746
Gso3g0153 534 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 28 522 - -
Gso3g0153 534 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
Gso3g0153 534 CDD LPLAT_LPCAT1-like 132 340 IPR045252 GO:0008374
Gso3g0153 534 Pfam EF-hand domain pair 465 508 IPR002048 GO:0005509
Gso3g0153 534 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Gso3g0153 534 MobiDBLite consensus disorder prediction 1 59 - -
Gso3g0153 534 PANTHER LYSOPHOSPHATIDYLCHOLINE ACYLTRANSFERASE 1-RELATED 28 522 - -
Gso3g0153 534 SMART plsc_2 157 267 IPR002123 GO:0016746
Gso3g0153 534 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 126 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0153 Gso-Chr3 1898056 1906570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0153 107 330 Acyl Lipid Metabolism Gene Families AT1G80950 31.890 7.80e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0153 K13510 - gmx:100815908 1028.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0694 7 7471698 7480243 Gso3g0153 3 1898056 1906570 GST