Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0116 ATGGGAGAAGCAACAGAAAGATATGCAGTTGTGACGGGTGCAAATAAAGGAATTGGATTAGAGATAGTTAGACAGTTAGCTTCAGCTGGAATCAAAGTGTTGCTCACAGCAAGAAATGAGAAGAAGGGTCTCCAAGCACTGGAAACACTCAAAGACTCAGGTCTATCCCACCTTGTACTGTTTCATCAGGTGGATGTGGCTGATGCAACAAATGTAGCTTCTTTGGCAGATTTTGTCAAATCCAAATTTGGGAAACTTGATATTCTGATTAACAATGCAGGGATTGGTGGAGTTGTAATTGATGACACTGATTTAATCACTACAGCCATCATGAATCGTGGGGCTATACCAGAAGATAATGGGACAAAGGGAATAACTCATACATACGAGTTAGCTGAAGAATGCTTGCAAATAAATTACTATGGCGCTAAAAAAACTACAGAATCCCTTATGCCTCTCCTCCAATTATCTGATTCACCAAGAATTGTGAATGTATCATCCACTCTGGGGCAGTTAGAGAGTTTGCCAAAAGAATCATGGGCCAGAGGAGTCTTCAATGATGTTGATAACCTTACTGAAGAGATAGTGGATGAAATATTGAACAAGTTTCTCAGAGATTTCAAAGAAGGTTCACTGGAAAGTAAAGGCTGGCCTAAGTATCTGAGTGCCTACATTGTCTCTAAAGCTGCTATGAATGCCTACACAAGAATCCTTTCTAAGAAATACCCTTCATTCTGCATCAATAGTGTTTGCCCTGGTTATGTCAAGACAGATATGACTGCCAACACCGGCTTCTTAACAGTTGAAGAAGGTGCTGCTAGTCCTGTGAGGCTAGCACTGCTTCCCATTGGTAGTCCATCAGGCTTCTTCTATTACAGGAGTGATGTGGCTTCCTTTTGA 900 0.4122 MGEATERYAVVTGANKGIGLEIVRQLASAGIKVLLTARNEKKGLQALETLKDSGLSHLVLFHQVDVADATNVASLADFVKSKFGKLDILINNAGIGGVVIDDTDLITTAIMNRGAIPEDNGTKGITHTYELAEECLQINYYGAKKTTESLMPLLQLSDSPRIVNVSSTLGQLESLPKESWARGVFNDVDNLTEEIVDEILNKFLRDFKEGSLESKGWPKYLSAYIVSKAAMNAYTRILSKKYPSFCINSVCPGYVKTDMTANTGFLTVEEGAASPVRLALLPIGSPSGFFYYRSDVASF* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0116 299 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 299 - -
Gso3g0116 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 281 IPR036291 -
Gso3g0116 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Gso3g0116 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Gso3g0116 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 224 243 IPR002347 -
Gso3g0116 299 Pfam short chain dehydrogenase 8 172 IPR002347 -
Gso3g0116 299 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Gso3g0116 299 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Gso3g0116 299 PRINTS Glucose/ribitol dehydrogenase family signature 224 243 IPR002347 -
Gso3g0116 299 PRINTS Glucose/ribitol dehydrogenase family signature 243 260 IPR002347 -
Gso3g0116 299 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 7 299 - -
Gso3g0116 299 CDD carb_red_PTCR-like_SDR_c 7 296 IPR045313 GO:0016616
Gso3g0116 299 Gene3D - 3 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0116 Gso-Chr3 1402925 1410321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0116 10 264 Acyl Lipid Metabolism Gene Families AT1G24360 22.868 2.67e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0116 K15095 - gmx:100801677 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0646 7 6877380 6880068 Gso3g0116 3 1402925 1410321 GST