Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0091 ATGCAAGCACTGTGTCCTTCATTCCCAGATTGCAGCACTCTTCGAGTGCCCAGATTCTCAATCAGTGCCACTCCTCCAAATTTTGCATCTTTTCTGAGCCCCTCCAAGGCTGGAATCAAATTGAGTTGTGGGATTCACAAACCAGTTTGGAGGAGTAGGTGTGATGGTTTAAGGGTACAGTGTGCAGCCTCCAATGGAGAAAATGATGATGATGATGGGTTTTACATCAGGTGTGTTGAGCTTGCAAGGAAGGCTGTTGGGTTCACCAGCCCCAATCCATTGGTGGGGTGTGTTATTGTAAAGGATGGCAAAGTTGTTGGTGAAGGCTTCCACCCTAAAGCAGGCCAACCTCATGCTGAGGTGTTTGCTCTGAGAGATGCTGGTGATTTGGCACAAAGTGCAACGGCTTATGTGAGCTTGGAACCTTGTAATCATTTTGGCAGGACTCCACCTTGCACTGAAGCTCTAATTAAAGCTAAAGTGAAAAAGGTTGTTGTTGGGATGGTGGATCCAAATCCCATAGTTGCCTTCAAAGGGGTGGAAAGATTGAGAGATGCGGGAATTGAAGTTATTGTGGGTGTAGAGGAAGAGCTATGCAAGAGCCTCAATGAGCCCTATATTCATCGCATGTTGACTGGAAAGCCTTTCCTTACTTTGAGATATTCTCTTTCTGTCAATGGAAACTTTTTGGACTTACTTGGGAATGGAGTTACAGACTGTGGTGGATACCACTCAAGGTTATTACAAGAATATGATGCAGTGGTAATCTCTTCTTCCTTATTCAGTGAAAATTTGTCAGTTCCTGCATCTCAAGAACCTGGAGCCAACCAACCAATTCGGATTATAATGCATAAAGATCCTGGTTCTTCAAAACAAATTCAACTAGGCATCAATGGTGTTACTGGCAAAGTAATAATCTTTACAGACAATAAAACAGTAACAGCTCCTGAAGTGGCTCAACAAGGAATTGAAATTGTAGTTCTGGATCAAATAAATCTGGATGTGATCTTGGATTATTGTAATTGTCAAGGATTGTGCAGTGTTCTGTTAGATATTAGAGGGAGTTTTGGTGAGTTTGAAGAGCTTGTTAAGGAAGGTATCAAGAAGAACTATATTAATAAATTTGTCACAGAAATTTTGCCAGTTTGGGACGGATTGGCTGAGCCAGATCCTCTGCAGACATTGAAGAGCTCAGAGCAAGGACTAAAAGTGGTCAATTTGAAGTCCATGGCCTCAGATCAGAGTGTTGTGATTGAGGGATATTTTAAACTTTAG 1275 0.422 MQALCPSFPDCSTLRVPRFSISATPPNFASFLSPSKAGIKLSCGIHKPVWRSRCDGLRVQCAASNGENDDDDGFYIRCVELARKAVGFTSPNPLVGCVIVKDGKVVGEGFHPKAGQPHAEVFALRDAGDLAQSATAYVSLEPCNHFGRTPPCTEALIKAKVKKVVVGMVDPNPIVAFKGVERLRDAGIEVIVGVEEELCKSLNEPYIHRMLTGKPFLTLRYSLSVNGNFLDLLGNGVTDCGGYHSRLLQEYDAVVISSSLFSENLSVPASQEPGANQPIRIIMHKDPGSSKQIQLGINGVTGKVIIFTDNKTVTAPEVAQQGIEIVVLDQINLDVILDYCNCQGLCSVLLDIRGSFGEFEELVKEGIKKNYINKFVTEILPVWDGLAEPDPLQTLKSSEQGLKVVNLKSMASDQSVVIEGYFKL* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0091 424 Gene3D Cytidine Deaminase, domain 2 60 208 - -
Gso3g0091 424 Gene3D Dihydrofolate Reductase, subunit A 209 421 IPR024072 -
Gso3g0091 424 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 74 168 IPR002125 -
Gso3g0091 424 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 37 261 - -
Gso3g0091 424 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 69 191 IPR002125 -
Gso3g0091 424 CDD Riboflavin_deaminase-reductase 77 187 - -
Gso3g0091 424 PANTHER RIBOFLAVIN BIOSYNTHESIS PROTEIN PYRD, CHLOROPLASTIC 37 261 - -
Gso3g0091 424 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 118 156 IPR016192 GO:0008270|GO:0016787
Gso3g0091 424 SUPERFAMILY Cytidine deaminase-like 72 210 IPR016193 GO:0003824
Gso3g0091 424 TIGRFAM eubact_ribD: riboflavin biosynthesis protein RibD 77 351 IPR004794 GO:0008835|GO:0009231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0091 Gso-Chr3 1019437 1021974 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0091 K11752 - gmx:100789675 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0626 7 6662603 6666078 Gso3g0091 3 1019437 1021974 GST