Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0398 ATGGTGCTCGAGGCGACTATGATCTGTATTGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAACAGACGCCGTCAATCTTATTTGCGGTGCTAAAACCCAGTCTAATCCAGAAAATACGGTGGGAGTTCTCACGATGGCGGGGAAGGGCGTTCGTGTTTTGGTGACCCCTACCAGTGATCTGGGCAAGATCTTAGCTTGCATGCATGGACTAGAAATAGGCGGTGAGATGAATCTAGCTGCTGGCATTCAGGTTGCACAATTGGCTCTTAAGCATCGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAGGTCCTGTTAAGCATGAGAAGAAAATGTTGGAGATGATTGGGAGAAAATTGAAAAAGAATAGTGTAGCTCTTGACATTGTCAATTTTGGTGAAGAAGATGAGGGGAAGACAGAGAAGTTGGAGGCACTCCTTTCAGCTGTTAACAATAATGATACCAGCCACATTGTTCATGTTCCATCTGGTCCAAACGCTCTTTCTGATGTACTAATAAGTACTCCTATTTTTACTGGTGATGGAGAAGGTGGAAGTGGTTTTGCAGCAGCTGCTGCTGCAGCAGCAGCAGGCGGTGTATCTGGATTTGAGTTTGGTGTTGATCCAAACTTGGACCCTGAACTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAAGAGAGAGCCAGACAAGAAGCAGCTGCCAAAAAGGCATCAGAGGATGCTTCCAAACAGGAGAAAGATGGTGAGCAGCAAGCTAGCCCACAGGATACAACAATGACTGAGGGTGCCAGTGCAGCAGCTTCTGAAGCCGAGACTAAGAGAACTGATTTGACGGACGATGAGAATGCTCTTCTACAGCAGGCCCTTGCAATGTCAATGGATGATCCCACAATTAACCATGAAGTGAGAGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAGCTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGACGTGAGTAAACTGTTGGCAGATCAGTCCTTTGTATCTTCTATCCTTGCATCGCTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGCCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA 1218 0.4639 MVLEATMICIDNSEWMRNGDYSPSRFQAQTDAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGGPVKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKTEKLEALLSAVNNNDTSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKASEDASKQEKDGEQQASPQDTTMTEGASAAASEAETKRTDLTDDENALLQQALAMSMDDPTINHEVRDTDMSEAAAEDPELALALQLSVEDSSKDSASQSDVSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEPQQKNEDKPPNEEEKK* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0398 405 SUPERFAMILY vWA-like 4 175 IPR036465 -
Gso2g0398 405 MobiDBLite consensus disorder prediction 240 290 - -
Gso2g0398 405 MobiDBLite consensus disorder prediction 365 405 - -
Gso2g0398 405 MobiDBLite consensus disorder prediction 379 393 - -
Gso2g0398 405 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 324 343 IPR003903 -
Gso2g0398 405 Gene3D - 220 306 - -
Gso2g0398 405 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Gso2g0398 405 Pfam Ubiquitin interaction motif 325 340 IPR003903 -
Gso2g0398 405 Pfam Ubiquitin interaction motif 292 307 IPR003903 -
Gso2g0398 405 Pfam von Willebrand factor type A domain 6 116 IPR002035 -
Gso2g0398 405 MobiDBLite consensus disorder prediction 263 277 - -
Gso2g0398 405 MobiDBLite consensus disorder prediction 240 262 - -
Gso2g0398 405 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Gso2g0398 405 SMART VWA_4 2 175 IPR002035 -
Gso2g0398 405 SMART uim 292 311 IPR003903 -
Gso2g0398 405 SMART uim 324 343 IPR003903 -
Gso2g0398 405 SMART uim 222 241 IPR003903 -
Gso2g0398 405 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Gso2g0398 405 CDD VWA_26S_proteasome_subunit 1 188 - -
Gso2g0398 405 Coils Coil 232 259 - -
Gso2g0398 405 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Gso2g0398 405 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 405 - -
Gso2g0398 405 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0398 Gso-Chr2 4236999 4242460 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0398 K03029 - gmx:100780583 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0659 11 5917990 5924456 Gso2g0398 2 4236999 4242460 PCT
Gso2g0398 2 4236999 4242460 Gso11g0659 11 5917990 5924456 PCT