Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0315 ATGAAGAGGAGCAGAAGCTTTTCCTTACTCTTTTACCTGTACTTGTTGGTGATTGTCTTTGCCACCTTCTCTATAGTTTCCATGGAAGCAAGGAAGACTAACATCAAGAAAAAACTTCACAAACGTCACAAAGGTGGTCACACTCGAGGGTCACATTCTCCATGTCCAGTTCCAGCCCCTCAAGGGAGTACCTTTGATGTTTTGGCTTTTGGCGCCAAGGGAAATGGAGTTTCTGATGATTCAGAGGCACTTCTAGCTGCATGGAATGGTGCATGTAAAGTTGCTGCTGCTACAGTTAAAATTCCAGCACAATTCAAGTTCCTCATGAAACCTGTTACTTTACAAGGCCCTTGTATGCCCGATCTTACTCTTCAGATAGATGGAACTCTATTGGCACCTTCTGAAGCATCTTCCTGGCCACAATCTAGTCTGTTTCAGTGGATAAATTTCAAGTGGGTGCAGAACTTCACCATCATAGGTTCTGGCACTGTTGATGGCCAAGGCTATAATTGGTGGAGCTCCTCAGAATTTTATGACATGCAGAAGAAGACCTACTCCAAACATATTCCTAGCATTAAACCAACCGCTATAAGATTCTACTCTAGCAACTTTGTAACAGTTCGTGATATCAGAATCATAAACAGTCCTCTTTGCCATCTAAAATTTGACAACTCAAAGGGGATTAAAGTTAACAACATTACAATATCCTCCCCCGAGAATAGCCCCAACACTGATGGCATTCACTTACAAAACACACAGGACGTAGAAATTCAACGTTCTATCATTTCAACAGGAGATGACTGTGTATCCATCCAAACTGGTTGCTCTAATGTTCATGTCCACCACATTAATTGTGGACCTGGACATGGTATAAGTTTGGGAGGATTAGGAAAAGACAAGACTAGTGCGGCATGTGTGTCTGACATCACTGTTGAGGATATCTCAATGAAAAACACTCTATTTGGAGCAAGGATCAAAACATGGCAGGGAGGCATTGGCATGGTTAAAAATGTGACATTTTCCAGAATTCAAGTCTATGATGTCATGTACCCAATAATGATAGACCAATACTATTGTGACAAGGAAATCTGCAAGAACCACACAAGCACTGTGGTGATTTCTGGGGTTAAGTTTGATCAAATACATGGAACTTATGGCATGCAGCCTGTGCATCTAGCTTGCAGCAATTCCATACCATGCACAGATGTTGATTTGAGCGATATTCAACTGAGTCCCTCCCCTAAGTATAGAGGTTTGCAACAAGCTGTGTGCTGGAACTCCTATGGAAAATCACAAGGTCCTTTGATACCTTCAAGCATTGATTATTGCTTGAGAAGTGGTGGTGGATTAATCAAGAGGATAGCAAGGTCACATGATAGAGTGTGTTACTAA 1392 0.4174 MKRSRSFSLLFYLYLLVIVFATFSIVSMEARKTNIKKKLHKRHKGGHTRGSHSPCPVPAPQGSTFDVLAFGAKGNGVSDDSEALLAAWNGACKVAAATVKIPAQFKFLMKPVTLQGPCMPDLTLQIDGTLLAPSEASSWPQSSLFQWINFKWVQNFTIIGSGTVDGQGYNWWSSSEFYDMQKKTYSKHIPSIKPTAIRFYSSNFVTVRDIRIINSPLCHLKFDNSKGIKVNNITISSPENSPNTDGIHLQNTQDVEIQRSIISTGDDCVSIQTGCSNVHVHHINCGPGHGISLGGLGKDKTSAACVSDITVEDISMKNTLFGARIKTWQGGIGMVKNVTFSRIQVYDVMYPIMIDQYYCDKEICKNHTSTVVISGVKFDQIHGTYGMQPVHLACSNSIPCTDVDLSDIQLSPSPKYRGLQQAVCWNSYGKSQGPLIPSSIDYCLRSGGGLIKRIARSHDRVCY* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0315 463 Gene3D - 57 441 IPR012334 -
Gso2g0315 463 MobiDBLite consensus disorder prediction 37 56 - -
Gso2g0315 463 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 16 451 - -
Gso2g0315 463 PANTHER - 16 451 - -
Gso2g0315 463 SUPERFAMILY Pectin lyase-like 57 440 IPR011050 -
Gso2g0315 463 SMART pbh1 335 356 IPR006626 -
Gso2g0315 463 SMART pbh1 252 273 IPR006626 -
Gso2g0315 463 SMART pbh1 225 251 IPR006626 -
Gso2g0315 463 SMART pbh1 275 295 IPR006626 -
Gso2g0315 463 SMART pbh1 306 327 IPR006626 -
Gso2g0315 463 Pfam Glycosyl hydrolases family 28 94 417 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0315 Gso-Chr2 3382458 3385841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0315 1 462 Glycoside Hydrolase AT3G26610 62.076 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0315 K01213 - gmx:100802722 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0315 2 3382458 3385841 Gso2g0315 2 3382458 3385841 ECH