Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0272 ATGCTATGCTCTCTAATCCGTTTCCGCCGTTACGCTCCTTCCTACCGCACTCTCCACTCTCTCTTTCCGACGATTAACCGTTTCTCCTCCTCCGTCTCCTCCGCCTCCGCCGCCATGGTTGCTCACGCGAAGGACGAGGCGTACCTCAGCGCGACGATTCCGAAACGCATCCGTCTCTTCGAGACCATCCTGGCGGAGCAGCACACTCAGCGCCTCTCGCTCTCCCCGGATCCTATCAAGGTTACTCTCCCCGACGGCAGCGTCAAGGAGGCGAAGAAGTGGCATACGACGCCGCTTGATGTTGCGCGTGAAATCTCGAAGAATTTGGCCAACAGCGCGCTCATCGCGAAGGTCAATGGCGTGCTCTGGGACATGACTCGCCCTCTCGAGGACGATTGCCAGCTCCAGATCTTCAAGTTCGACGACGACGAAGGCCGCGACACCTTCTGGCACTCCAGCGCCCACATTCTCGGCCAGTCACTTGAGACGGAGTATGGATGCAAGCTCTGCATTGGGCCTTGCACTACAAGAGGAGAGGGATTCTATTATGATGCATTTTACGGGGAGTTGGGTCTCAATGACGATCACTTTAAGCAGATTGAGGCTGGAGCATTGAAGGCTGTTGCGGAAAAGCAACCCTTTGAGCGTATTGAAGTTACACGTGATCAGGCACTTGAGATGTTTTCAGATAATAAGTTTAAGGTTGAGATTATCAATGATTTGCCTGCCGACAAAACTATCACAGTATACAGATGTGGCCCCTTGGTTGATTTGTGTCGTGGACCCCATATACCTAATACATCCTTTGTCAAAGCAATTGCGTGCTTAAAGGCTTCATCAGCATATTGGAGGGGGGACAAAGATCGGGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAAAGTCTAAAGGAATACTTGCATCGGCTGGAGGAGGCTAAAAAGTATGATCACAGGATTTTGGGTGTGAAACAGGAGCTTATTCTTCATCATGAATGGAGCCCGGGAAGCTGGTTTTTTCTTCCGCAAGGCACTCGGATCTACAACAAACTCATGGACTTCATTCGGAATCAGTACAGAGACAGGGGCTATCAAGAGGTCATATCTCCCAATGTATTTAACATGGAACTGTGGGTGCAATCTGGTCATGCTGCAAATTATAGGGAGGATATGTTTATCTTAGAGGTTGACAAACAAGAGTTTGGGTTGAAACCAATGAATTGCCCAGGGCACTGCCTGATGTTTAAACACAGGGTTCGATCATATAGAGAACTTCCTCTTCGTTTCGCTGATTTTGGGGTTTTGCATCGGAATGAGGCTAGTGGCGCCCTGAGTGGATTAACACGTGTTAGGAGATTCCAGCAGGACGATGCACATATTTTCTGCAGGGAGTCCCAGATAAAGGATGAAGTGAGGAACAGCTTGAATTTCATCAATTATGTCTATAAGATATTTGGTTTCACATATGAGCTGAAGCTTTCAACGAGGCCAGAAAAATACCTAGGAGATATTGCAACTTGGGACAAAGCTGAAAGTGCTCTTAAAGAAGCTTTAGATGATTTTGGCAAGCCTTGGCAGTTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGACATCAGTGTATCTGATGCATTGGGTAGGAAATTCCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGACCTGTAATGATACACAGAGCCATTCTAGGATCTGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCTTTCTGGCTCAGTCCTCGTCAAGCAATTGTATGCCCTGTGTCTGAAAAGTCACAAGCTTATGCATTACAGGTGCGAGATCAGATCCACCAAGCAGGGTATTACGTTGATGCTGATACAACTGATAGGAAGATTCAAAAGAAGGTGCGAGAAGCACAATTAGCACAATACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAGGTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAGAAGCTACTTGAACATTTCAGAGACAAAGCTGCAGCTTTCGAATGA 2142 0.4673 MLCSLIRFRRYAPSYRTLHSLFPTINRFSSSVSSASAAMVAHAKDEAYLSATIPKRIRLFETILAEQHTQRLSLSPDPIKVTLPDGSVKEAKKWHTTPLDVAREISKNLANSALIAKVNGVLWDMTRPLEDDCQLQIFKFDDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGELGLNDDHFKQIEAGALKAVAEKQPFERIEVTRDQALEMFSDNKFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLHRLEEAKKYDHRILGVKQELILHHEWSPGSWFFLPQGTRIYNKLMDFIRNQYRDRGYQEVISPNVFNMELWVQSGHAANYREDMFILEVDKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRNSLNFINYVYKIFGFTYELKLSTRPEKYLGDIATWDKAESALKEALDDFGKPWQLNEGDGAFYGPKIDISVSDALGRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQAYALQVRDQIHQAGYYVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDLAEHKVMSIEKLLEHFRDKAAAFE* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0272 713 Pfam Anticodon binding domain 618 707 IPR004154 -
Gso2g0272 713 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 42 712 - -
Gso2g0272 713 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 247 296 IPR012947 GO:0004812|GO:0005524|GO:0043039
Gso2g0272 713 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 345 611 IPR006195 -
Gso2g0272 713 ProSiteProfiles TGS domain profile. 77 139 IPR004095 -
Gso2g0272 713 SMART tRNA_SAD_4 247 296 IPR012947 GO:0004812|GO:0005524|GO:0043039
Gso2g0272 713 Hamap Threonine--tRNA ligase [thrS]. 144 711 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Gso2g0272 713 Pfam TGS domain 79 139 IPR004095 -
Gso2g0272 713 CDD TGS_ThrRS 79 144 - -
Gso2g0272 713 SUPERFAMILY Class II aaRS ABD-related 604 708 - -
Gso2g0272 713 SUPERFAMILY Class II aaRS and biotin synthetases 320 603 IPR045864 -
Gso2g0272 713 Gene3D - 77 138 IPR012675 -
Gso2g0272 713 SUPERFAMILY TGS-like 79 139 IPR012676 -
Gso2g0272 713 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 401 606 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gso2g0272 713 SUPERFAMILY ThrRS/AlaRS common domain 141 318 IPR018163 GO:0000166
Gso2g0272 713 Gene3D - 610 712 IPR036621 -
Gso2g0272 713 CDD ThrRS_anticodon 616 706 - -
Gso2g0272 713 Gene3D - 142 300 - -
Gso2g0272 713 Gene3D Bira Bifunctional Protein; Domain 2 302 609 IPR045864 -
Gso2g0272 713 TIGRFAM thrS: threonine--tRNA ligase 150 708 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Gso2g0272 713 CDD ThrRS_core 320 616 IPR033728 -
Gso2g0272 713 PRINTS Threonyl-tRNA synthetase signature 406 434 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Gso2g0272 713 PRINTS Threonyl-tRNA synthetase signature 439 462 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Gso2g0272 713 PRINTS Threonyl-tRNA synthetase signature 540 568 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Gso2g0272 713 PRINTS Threonyl-tRNA synthetase signature 584 597 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Gso2g0272 713 PRINTS Threonyl-tRNA synthetase signature 611 623 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Gso2g0272 713 PANTHER THREONINE-TRNA LIGASE 42 712 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0272 Gso-Chr2 2958306 2969319 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0272 K01868 - gmx:100802879 1433.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0272 2 2958306 2969319 Gso2g0272 2 2958306 2969319 ECH
Gso1g0289 1 3431503 3441903 Gso2g0272 2 2958306 2969319 GST