Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0243 ATGGGACTTCTTCAACGTCCCTTGTGTTGCCACTCACAACAAGACCAACAACAACAACCACCACAATCCCATGATCACCTTCATTTCGAATCATCAACCTCATCCTCCCTCTCTTCACAAGCAAGCCTCCCTTCCATTCCCTCCCTCACCCCACAAAAACTGCACCACCCCGAAGAACAACCGCAAACCACCCACCACAAACTTGTAACTACCGTCAAGGGCCACACCTCCACGATCTTCTCCCTCGCCCTGCACGGCAAGTCTCTCTACAGCGCCTCCTCGAACGGAGAAATAAGAGCATGCAGCAGAGACCCTACATCGACCGAATTAAAATATATAAGTGGAGAACAACCTCTACCTAATACCACTATTGTTGTGAACAGCAACGCGCCAATCAAGTCCCTCATCGTATCACACGACAAGCTATTCACGGCTCACCAAGACCACAAAATCCGCGTCTGGAAAACAACCGACCAACCCGGTAATAATAATAACAACCCCAACTACTACAAATGCGTCGCCTCGCTTCCCACGCTCCACGACCGGTTCTCCAAACTCTTCTCCTCCGAGAACTACGTCGAGATTCGCCGCCACAAGAAGCGCACGTGGGTGCATCACGTGGACACCGTCTCCGCCCTCGCACTTTCCCAAGACGGGTCTCTTCTCTACTCTGCGTCGTGGGACAGAACATTCAAAATCTGGCGAACCTCGGATTTCAAGTGTCTGGAGTCTGTTAAAAACGCGCACGAGGATGCAATTAATTCCTTAATTTTGTCGAATAACGGTATTGTCTATACAGGTTCTGCGGATACGAAAATAAAGATGTGGAAGAAGTTAGAAGGAGATAAAAAGCATTCTCTAATAGGAACATTGGAGAAGCATAAATCTGCTGTTAACGCTCTTGCTCTTAACTCTGATGGGTCAGTGTTGTATTCAGGTGCGTGTGATAGGTCAATTTTAGTGTGGGAGGGTGATGAAGATAATAACAATAACATGGTGGTGGTGGGTGCTTTAAGGGGGCACACGAAAGCCATACTGTGTTTGGTGGTGGAGTCTGACTTGGTGTGTAGCGGATCTGCTGATAACAGTGTTAGGATATGGAGGAGAAGCGTTGAGAATGAGAAGAAGAGTTACTATTCGTGTTTGGCGGTGCTGGAAAGTCATCGACGACCCGTGAAGTGTTTGGCTATGGCTGTTGACTCCAACAGTGGTGGTGGTGGTGGTCCTCATGAGGATGATGATAGTAGGTCTTATCTGGTTTACAGTGCAGGTTTGGATTGTGACATTAAAGTCTGGCAAATACGCGTTCCCTTGTGA 1317 0.4806 MGLLQRPLCCHSQQDQQQQPPQSHDHLHFESSTSSSLSSQASLPSIPSLTPQKLHHPEEQPQTTHHKLVTTVKGHTSTIFSLALHGKSLYSASSNGEIRACSRDPTSTELKYISGEQPLPNTTIVVNSNAPIKSLIVSHDKLFTAHQDHKIRVWKTTDQPGNNNNNPNYYKCVASLPTLHDRFSKLFSSENYVEIRRHKKRTWVHHVDTVSALALSQDGSLLYSASWDRTFKIWRTSDFKCLESVKNAHEDAINSLILSNNGIVYTGSADTKIKMWKKLEGDKKHSLIGTLEKHKSAVNALALNSDGSVLYSGACDRSILVWEGDEDNNNNMVVVGALRGHTKAILCLVVESDLVCSGSADNSVRIWRRSVENEKKSYYSCLAVLESHRRPVKCLAMAVDSNSGGGGGPHEDDDSRSYLVYSAGLDCDIKVWQIRVPL* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0243 438 Gene3D - 283 437 IPR015943 GO:0005515
Gso2g0243 438 Gene3D - 189 282 IPR015943 GO:0005515
Gso2g0243 438 CDD WD40 68 433 - -
Gso2g0243 438 Pfam WD domain, G-beta repeat 201 234 IPR001680 GO:0005515
Gso2g0243 438 Pfam WD domain, G-beta repeat 240 277 IPR001680 GO:0005515
Gso2g0243 438 Pfam WD domain, G-beta repeat 287 322 IPR001680 GO:0005515
Gso2g0243 438 Pfam WD domain, G-beta repeat 336 367 IPR001680 GO:0005515
Gso2g0243 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 277 IPR001680 GO:0005515
Gso2g0243 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 244 IPR001680 GO:0005515
Gso2g0243 438 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 25 437 IPR045182 -
Gso2g0243 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 234 - -
Gso2g0243 438 MobiDBLite consensus disorder prediction 1 65 - -
Gso2g0243 438 Gene3D - 57 188 IPR015943 GO:0005515
Gso2g0243 438 MobiDBLite consensus disorder prediction 9 49 - -
Gso2g0243 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 367 IPR001680 GO:0005515
Gso2g0243 438 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 25 437 - -
Gso2g0243 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 323 - -
Gso2g0243 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 367 - -
Gso2g0243 438 SMART WD40_4 196 235 IPR001680 GO:0005515
Gso2g0243 438 SMART WD40_4 238 277 IPR001680 GO:0005515
Gso2g0243 438 SMART WD40_4 378 433 IPR001680 GO:0005515
Gso2g0243 438 SMART WD40_4 284 323 IPR001680 GO:0005515
Gso2g0243 438 SMART WD40_4 331 368 IPR001680 GO:0005515
Gso2g0243 438 SMART WD40_4 117 155 IPR001680 GO:0005515
Gso2g0243 438 SMART WD40_4 65 102 IPR001680 GO:0005515
Gso2g0243 438 SUPERFAMILY WD40 repeat-like 65 434 IPR036322 GO:0005515
Gso2g0243 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 323 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0243 Gso-Chr2 2596477 2598062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0243 186 382 Acyl Lipid Metabolism Gene Families AT3G18860 28.283 1.01e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0243 - - gmx:100784166 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0243 2 2596477 2598062 Gso2g0243 2 2596477 2598062 ECH