Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0228 ATGAGAACCCATTTTCACTCTCTCCCATTATTTTTTTGGTTCACTCTATCCCTTATATTGGGTCAAACCCGACCCGACCCTGACCCACTTCAAGATTATTGTGTTGCAGATAGCAAAAGTAATTTTTTCATTAATGGGGTACCTTGCATTAACCCAGATAAAGTTTCCTCATCCCATTTTGTCACATCTGCTTTATCAAAAACTGGCAACACTAGTAACCAATTTGGCTTCAGTGTCACAGCCACCACCACTGCTAATCTTCCTGGGCTTAACACCTTGGGCCTGGTACTGGTCCGGGTCGATATAGCGGGCAACGGGATAGTGCCACCTCACTCGCATCCGAGGGCCTCGGAAGTTACCACTTGCCTAAAGGGCCTGCTTCTTGTGGGCTTTGTTGACACAAGTAACCGTGTCTTTACCCAGAACTTGAGGCCTGGTGAGTCATTTGTGTTCCCAAAGGGCCTGGTCCACTTCTTGTTCAATAGTGATTCAAGGGAACCAGCAATAGCCATATCTGGTCTCAATAGCCAGAACCCAGGAGCACAAATTGCATCACTTGCAACATTTGCTAGCAAGCCTCCTATTCCTGATGACATTCTTAAGAAAGCTTTCCAAATTTCCAAAGGAGAAGTGGAAACTATTCGTAGAAACCTTGGAGGATGA 663 0.4555 MRTHFHSLPLFFWFTLSLILGQTRPDPDPLQDYCVADSKSNFFINGVPCINPDKVSSSHFVTSALSKTGNTSNQFGFSVTATTTANLPGLNTLGLVLVRVDIAGNGIVPPHSHPRASEVTTCLKGLLLVGFVDTSNRVFTQNLRPGESFVFPKGLVHFLFNSDSREPAIAISGLNSQNPGAQIASLATFASKPPIPDDILKKAFQISKGEVETIRRNLGG* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0228 220 Pfam Cupin 65 211 IPR006045 -
Gso2g0228 220 ProSitePatterns Germin family signature. 106 119 IPR019780 GO:0030145
Gso2g0228 220 SUPERFAMILY RmlC-like cupins 55 218 IPR011051 -
Gso2g0228 220 SMART Cupin_1_3 63 212 IPR006045 -
Gso2g0228 220 CDD cupin_OxOx 26 218 - -
Gso2g0228 220 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 1 12 219 - -
Gso2g0228 220 Gene3D Jelly Rolls 25 220 IPR014710 -
Gso2g0228 220 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 219 - -
Gso2g0228 220 PRINTS Germin signature 111 131 IPR001929 GO:0030145
Gso2g0228 220 PRINTS Germin signature 141 161 IPR001929 GO:0030145
Gso2g0228 220 PRINTS Germin signature 175 190 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0228 Gso-Chr2 2419034 2419843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0228 26 219 Miscellaneous Gene Families AT5G39130 44.444 2.90e-53 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0228 - - gmx:100500154 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0228 2 2419034 2419843 Gso2g0228 2 2419034 2419843 ECH
Gso1g0326 1 4020210 4021310 Gso2g0228 2 2419034 2419843 GST