Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0172 ATGCAACATAACATTAGCAACTCAAAGTCAATGAGGAGAGATCACATAACATTAGCAAAACTCGTATCAGATGGCTTCTACAGAGAAGCACTCTCCCTCTTCTCCCACCTCCATTCTTGTTCTTCCCACACCCTTCACTCTTTCACCTTCCCCACTCTCTTCAAAGCATGCACCAACCTCCGTTCCCCTTCCCACACCCAAACCCTCCATGCCCATCTCCTCAAAACCGGTTTCCATTCCGACCCTTATGCTTCCTCCGCCCTCACTGCCGCCTACGCCGCCAACCCTCGCCATTTCCTCGACGCACTCAAGGCGTTCGACGAAATGCCCCAACCAAACGTCGCATCTCTAAATGCTGCACTTTCTGGCTTCTCGCGAAACGGGCGTCGCGGAGAAGCTCTCCGGGTGTTCCGGCGAGCTGGGTTGGGCCCCTTGAGGCCCAACTCGGTCACTATTGCGTGCATGCTCGGCGTTCCTCGTGTGGGTGCCAACCACGTTGAGATGATGCATTGCTGCGCGGTGAAGTTAGGGGTTGAATTTGATGCCTATGTTGCCACCTCGCTTGTAACTGCGTATTGTAAGTGTGGAGAGGTGGTTTCGGCTTCTAAGGTGTTTGAGGAGTTGCCTGTTAAGAGTGTGGTGAGTTACAACGCTTTCGTTTCGGGTTTGTTGCAGAATGGGGTTCCTCGTTTGGTGTTGGATGTGTTTAAGGAGATGATGAGGGGGGAGGAGTGTGTGGAGTGCAAACTCAATTCAGTGACGTTGGTGTCTGTTCTTTCTGCGTGTGGTAGTCTACAAAGTATTCGTTTTGGGAGGCAGGTTCATGGGGTTGTTGTGAAACTTGAAGCAGGTGATGGGGTTATGGTGATGACTGCACTTGTAGATATGTATTCAAAGTGTGGTTTTTGGCGTTCTGCTTTTGAGGTTTTCACAGGGGTGGAAGGGAATAGGAGAAATTTGATCACTTGGAATTCCATGATTGCGGGAATGATGTTAAATAAAGAGAGTGAGAGAGCTGTTGATATGTTTCAAAGGCTGGAATCTGAAGGGTTGAAGCCTGATTCAGCTACTTGGAATTCCATGATCAGTGGGTTTGCACAACTAGGGGAGTGTGGGGAAGCTTTTAAGTACTTTGGGCAAATGCAGTCTGTTGGTGTGGCTCCATGTTTGAAAATTGTTACTAGCCTTTTGTCAGCATGTGCAGATTCATCTATGTTACAGCATGGAAAAGAGATACATGGGTTATCTTTAAGAACTGATATCAATAGGGATGATTTTTTGGTAACTGCTCTGGTTGATATGTACATGAAATGTGGGCTTGCTTCTTGGGCACGAGGAGTTTTTGATCAGTATGATGCAAAACCAGATGATCCGGCATTTTGGAATGCAATGATTGGTGGGTATGGAAGAAATGGAGACTATGAGTCTGCCTTTGAAATCTTTGATGAAATGCTGGAAGAAATGGTTCGACCAAACAGTGCAACATTTGTCAGTGTTTTATCTGCTTGCAGCCACACGGGTCAGGTTGATAGAGGGTTGCATTTTTTCAGAATGATGAGAATAGAGTATGGCTTGCAGCCAAAGCCTGAGCATTTTGGTTGCATAGTTGATCTTTTAGGTCGGTCTGGTCGATTGAGTGAAGCTCAAGACCTGATGGAGGAATTAGCAGAGCCTCCTGCATCTGTTTTTGCTTCTTTGCTTGGTGCTTGTAGGTGTTACCTAGATTCCAATCTTGGGGAAGAAATGGCCAAGAAGCTTCTAGATGTAGAACCAGAAAACCCTGCTCCTCTGGTGGTATTGTCTAACATATATGCTGGACTGGGAAGATGGAAGGAAGTAGAAAGAATAAGAGGGGTGATCACGGATAAGGGACTGGACAAACTCTCTGGCTTTAGCATGATAGAACTTGCATGA 1914 0.4676 MQHNISNSKSMRRDHITLAKLVSDGFYREALSLFSHLHSCSSHTLHSFTFPTLFKACTNLRSPSHTQTLHAHLLKTGFHSDPYASSALTAAYAANPRHFLDALKAFDEMPQPNVASLNAALSGFSRNGRRGEALRVFRRAGLGPLRPNSVTIACMLGVPRVGANHVEMMHCCAVKLGVEFDAYVATSLVTAYCKCGEVVSASKVFEELPVKSVVSYNAFVSGLLQNGVPRLVLDVFKEMMRGEECVECKLNSVTLVSVLSACGSLQSIRFGRQVHGVVVKLEAGDGVMVMTALVDMYSKCGFWRSAFEVFTGVEGNRRNLITWNSMIAGMMLNKESERAVDMFQRLESEGLKPDSATWNSMISGFAQLGECGEAFKYFGQMQSVGVAPCLKIVTSLLSACADSSMLQHGKEIHGLSLRTDINRDDFLVTALVDMYMKCGLASWARGVFDQYDAKPDDPAFWNAMIGGYGRNGDYESAFEIFDEMLEEMVRPNSATFVSVLSACSHTGQVDRGLHFFRMMRIEYGLQPKPEHFGCIVDLLGRSGRLSEAQDLMEELAEPPASVFASLLGACRCYLDSNLGEEMAKKLLDVEPENPAPLVVLSNIYAGLGRWKEVERIRGVITDKGLDKLSGFSMIELA* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0172 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Gso2g0172 637 Pfam E motif 573 635 IPR046848 -
Gso2g0172 637 Gene3D Tetratricopeptide repeat domain 165 273 IPR011990 GO:0005515
Gso2g0172 637 Gene3D Tetratricopeptide repeat domain 280 416 IPR011990 GO:0005515
Gso2g0172 637 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 19 632 - -
Gso2g0172 637 TIGRFAM PPR: pentatricopeptide repeat domain 321 355 IPR002885 -
Gso2g0172 637 TIGRFAM PPR: pentatricopeptide repeat domain 214 241 IPR002885 -
Gso2g0172 637 TIGRFAM PPR: pentatricopeptide repeat domain 461 492 IPR002885 -
Gso2g0172 637 TIGRFAM PPR: pentatricopeptide repeat domain 357 388 IPR002885 -
Gso2g0172 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Gso2g0172 637 Pfam PPR repeat family 319 366 IPR002885 -
Gso2g0172 637 Pfam PPR repeat family 460 504 IPR002885 -
Gso2g0172 637 Gene3D Tetratricopeptide repeat domain 457 626 IPR011990 GO:0005515
Gso2g0172 637 Gene3D Tetratricopeptide repeat domain 15 164 IPR011990 GO:0005515
Gso2g0172 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Gso2g0172 637 PANTHER OS07G0578800 PROTEIN-RELATED 19 632 IPR045215 GO:0003723|GO:0009451
Gso2g0172 637 Pfam PPR repeat 186 209 IPR002885 -
Gso2g0172 637 Pfam PPR repeat 214 241 IPR002885 -
Gso2g0172 637 Pfam PPR repeat 116 139 IPR002885 -
Gso2g0172 637 Pfam PPR repeat 532 555 IPR002885 -
Gso2g0172 637 Pfam PPR repeat 291 310 IPR002885 -
Gso2g0172 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Gso2g0172 637 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0172 Gso-Chr2 1810993 1813494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0172 45 636 Glycoside Hydrolase AT3G49170 27.515 5.40e-69 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0172 - - gmx:100809263 1251.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0172 2 1810993 1813494 Gso2g0172 2 1810993 1813494 ECH