LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso20g1300	ATGGATTCGAGCGACAGTGGTCGCGGTTACTCGAAGCGCGAGCGGGACGACGAGGATTGGGAGTTTAGTGATAAGCGGAAGGATAGGTCTCGGAAGTTCGGTGCCAATGGCGGGGACGAGGGCGAGGGTTCCGACGGAAGCGCGAGAAGGAAGCGTTCTAGCAGAACCACCACCGATGGCGACGATTACGATTCGCGCTCCAAGCAAGTGGCCAAGAAGAGGCTGGAGGAGAGCACCCTGGAGAAGTTGAGCAGTTGGTATGAGGACGGGGAATTGGATGATAAGGCCGCGAGGAAGCGCGGCGGTGACGGTGAGTTTCATGAGAGTGTGGTGTGTAAAGAGGACGGTAAGGGTGAGGGCGGCGGTGGCGGCGGTGGTAGGGAGAAGGGTGGGCATGAGGGTAAGAGTTCGAGGAGGAAGTGGGATGAAGTTGATGTTGGTAGTGTGAGGAAGGTGCAAGATGAGAAGGTGGATTTGAGGAGTGGGAAGCATGACAGTTCTAGGGATAGGGAGAGGGGTGGATCTGCTAGGAGTGAGCATGGGGAGAGTAAAACCTCTGGTGGTGGTGATAGGGTTGTGAAGTCTACTAGTAAGGAGGATAGAAGAGGGGATTCTGAGAGAGGGAAGAGTAAGGGGAAGTCGGATTCGGGGGATGTTGGTCGTGAGGAGAGGGTTGAGAAGCCCAGGCACCATAGGGCGGCTGCTGGTTATGATGTGGCTGAAACCTGGGATAGGTCGTTGAATGCAGAGGAGGATGGACATGTGCGGGTTAGGGATAAGAGTACCAGGGAAAGTGGGAACTCAAACAGGTCGAGGACGCCGGAGAAGAGTGGAAAACGCCATCAAGATTTGGAGAACTCTGAGGTGGATTATGAAAGAAGTAGTAGCTTTAAAAGGAAGGAGCATGAAGGTGATGGCTATAAGGATGATAGATCCAAAGGGAAAGATGATACTTGGAATGATAGGAGGAAGGATCGGGAAAGTTCTAAAGAAAGTTGGAAGAGGAGGCAGCCGAGCAACACTGACAAAGATTCAAAAAATGAAGAGAGTGCTTTTGATGACAACAGAGATTGGGAGTTGCCTAGACATGGTTATGAGAGGATGGATAATGAAAGGCCTCATGGACGGTTTGGTGGTAGAAAAGATGTGAGCAGGGGGGAAGCTGTTAAAACATCCACTAAGTTTGGGATTTCGAATGACAACTATGATGTGATAGAGATCCAGACCAAGTTTTATGACTATGGGAAATCAGAATCTATGTCCAACCATACCAAGAGAACTGAAACTCATCAGCAGTACATTGCTAAATCAGGTGCTAATGATGAAGAATGGGCATACCATCAAGATGAAAGAGGAAGGAAGAGTGATTTATCTGGTTCTGGGACACCTGGTGAAGACCTGAAGGAGAGATATGCTGATGATGACTATGATTTTTATGGGGGAAGAGGAAGAGGTCAGAAAGGTGGTGTATCTGCCCGTGGTACTGGTGGCCAAAGTTCTAGTACTGGTGGCTCACAGCCTCAATATGGAAATCCAGAGTCTGGATCCTTTAACCGAGCTGGTGCACAAGGAATAAAAGGGAACAGGGTTGGAAGAGGAGGAAGGATTAGGCCTACTGGGAGAGACAATCAGCAAGTTGGAATACCACTGCCAATGATGGGATCACCCTATGGACCTCTTGGTATGCCTCCGCCTGGGGCAATGCAGCCTCTTTCACATGGTATGTCACCTGCTCCTGGTCCACCAATTTCCCCTGGAGTCTTCATGTCACCATTTACTCCTGGTGTTTGGCCTGGAGCACGAGGTGTCGATTTGAATATTATAGGTGTACCACCTGCAGTGTCTCCTGTACCCCCAGGTCCACGATTTAATGCTGCTAATATAGGGAACCCACCAAATCCTGTAATGTATTATAACCAATCAGGCCCTGGAAGGGTAATGCCCCCAAGCATTTGTACTCCTGGTTTTAATCCTACAGGATCAATTGGTCGAGGAGCCCCACCTGATAAAGCTCCAGGGGGATGGGCTCCTCCTAAAAGTAGTGGAACTCTTGGTAAAGCTCCTTCCAGAGGTGAACAGAATGATTATTCTCAAAACTTTGTTGACACTGGTCTGCGGCCACAGAATTTCATTAGGGAGCTTGAGCTCACAAATGTTGTGGAGGACTATCCTAAGCTTAGAGAGCTTATACAGAAAAAGGATGAGATTGTGGAAAAATCTGCATCTGCTCCTATGTATTATAAGTGTGATTTGAAAGAGTTTGAACTATCTCCGGAGTTCTTTGGAACAAAGTTTGATGTCATTCTTGTAGATCCCCCATGGGAGGAGTATGTGCACCGCGCTCCTGGTGTTGCTGATCACATGGAGTACTGGACATTTGAAGAAATAATGAATCTCAAGATTGAGGCTATAGCAGATACGCCTTCTTTCATCTTCCTTTGGGTGGGTGATGGTGTAGGCCTTGAACAAGGTCGTCAATGTCTAAAAAAGTGGGGTTTTCGGAGGTGTGAAGATATATGTTGGGTAAAGACAAACAAAAGTAATGCAACTCCAGGACTGCGGCATGATTCACATACTTTATTTCAACATTCAAAGGAACACTGCTTGATGGGCATAAAAGGAACAGTTCGTCGAAGTACTGATGGACATATAATTCATGCCAATATTGACACGGATGTCATTATCGCTGAAGAACCTCCTTATGGTTCAACTCAAAAGCCTGAAGATATGTACAGGATCATTGAGCACTTTGCCCTTGGAAGGAGGAGACTAGAACTATTTGGTGAAGACCACAATATCCGAGCCGGTTGGCTGACTGTTGGTAAAGAATTGTCATCTTCAAATTTTAATAAAGAGGCATATGTGAAAAGTTTTGCTGACAAAGATGGGAAAGTTTGGCAAGGAGGTGGGGGAAGAAATCCACCTCCAGAGGCACCTCATCTGGTGGTGACTACTCCTGATATAGAGGCTCTTAGGCCAAAGTCTCCAATGAAGAACCAACAACAACTGCAGCAGCAGAATTCAGTATCCATTTCGTTGACGTCAGCTAGTGCATCAAACAGAAGGCCTGCTGGGAATTCGCCGCAGAACACAACTGCACTAGGCGTCAACCAAGACGCTTCTAGCTCAAACCCTTCTACTCCAGCTCCTTGGGGTTCACCTCTGGAGGGCTTCAAGGGACGTGAAGGCTCTGTATTGCCTTCAGATGATAAAGTAATGGATATGTACGGGTTTCATGGACCAGCATCAGCAAACTATCTAGATTTTGAATCATACAGACAAATGAATCTGTTGTAG	3297	0.4744	MDSSDSGRGYSKRERDDEDWEFSDKRKDRSRKFGANGGDEGEGSDGSARRKRSSRTTTDGDDYDSRSKQVAKKRLEESTLEKLSSWYEDGELDDKAARKRGGDGEFHESVVCKEDGKGEGGGGGGGREKGGHEGKSSRRKWDEVDVGSVRKVQDEKVDLRSGKHDSSRDRERGGSARSEHGESKTSGGGDRVVKSTSKEDRRGDSERGKSKGKSDSGDVGREERVEKPRHHRAAAGYDVAETWDRSLNAEEDGHVRVRDKSTRESGNSNRSRTPEKSGKRHQDLENSEVDYERSSSFKRKEHEGDGYKDDRSKGKDDTWNDRRKDRESSKESWKRRQPSNTDKDSKNEESAFDDNRDWELPRHGYERMDNERPHGRFGGRKDVSRGEAVKTSTKFGISNDNYDVIEIQTKFYDYGKSESMSNHTKRTETHQQYIAKSGANDEEWAYHQDERGRKSDLSGSGTPGEDLKERYADDDYDFYGGRGRGQKGGVSARGTGGQSSSTGGSQPQYGNPESGSFNRAGAQGIKGNRVGRGGRIRPTGRDNQQVGIPLPMMGSPYGPLGMPPPGAMQPLSHGMSPAPGPPISPGVFMSPFTPGVWPGARGVDLNIIGVPPAVSPVPPGPRFNAANIGNPPNPVMYYNQSGPGRVMPPSICTPGFNPTGSIGRGAPPDKAPGGWAPPKSSGTLGKAPSRGEQNDYSQNFVDTGLRPQNFIRELELTNVVEDYPKLRELIQKKDEIVEKSASAPMYYKCDLKEFELSPEFFGTKFDVILVDPPWEEYVHRAPGVADHMEYWTFEEIMNLKIEAIADTPSFIFLWVGDGVGLEQGRQCLKKWGFRRCEDICWVKTNKSNATPGLRHDSHTLFQHSKEHCLMGIKGTVRRSTDGHIIHANIDTDVIIAEEPPYGSTQKPEDMYRIIEHFALGRRRLELFGEDHNIRAGWLTVGKELSSSNFNKEAYVKSFADKDGKVWQGGGGRNPPPEAPHLVVTTPDIEALRPKSPMKNQQQLQQQNSVSISLTSASASNRRPAGNSPQNTTALGVNQDASSSNPSTPAPWGSPLEGFKGREGSVLPSDDKVMDMYGFHGPASANYLDFESYRQMNLL*	1099

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso20g1300	1098	ProSiteProfiles	mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase-like (MT-A70-like) family profile.	541	1086	-	-
	Gso20g1300	1098	PANTHER	N6-ADENOSINE-METHYLTRANSFERASE SUBUNIT METTL14	1	1098	-	-
	Gso20g1300	1098	MobiDBLite	consensus disorder prediction	657	701	-	-
	Gso20g1300	1098	MobiDBLite	consensus disorder prediction	1	389	-	-
	Gso20g1300	1098	ProSitePatterns	N-6 Adenine-specific DNA methylases signature.	768	774	IPR002052	GO:0003676\|GO:0008168\|GO:0032259
	Gso20g1300	1098	MobiDBLite	consensus disorder prediction	442	456	-	-
	Gso20g1300	1098	MobiDBLite	consensus disorder prediction	686	701	-	-
	Gso20g1300	1098	MobiDBLite	consensus disorder prediction	994	1066	-	-
	Gso20g1300	1098	ProSiteProfiles	MT-A70-like family profile.	724	963	IPR007757	-
	Gso20g1300	1098	PANTHER	N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT	1	1098	IPR045123	-
	Gso20g1300	1098	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	759	913	IPR029063	-
	Gso20g1300	1098	MobiDBLite	consensus disorder prediction	492	518	-	-
	Gso20g1300	1098	MobiDBLite	consensus disorder prediction	1	388	-	-
	Gso20g1300	1098	MobiDBLite	consensus disorder prediction	466	481	-	-
	Gso20g1300	1098	MobiDBLite	consensus disorder prediction	417	549	-	-
	Gso20g1300	1098	MobiDBLite	consensus disorder prediction	995	1050	-	-
	Gso20g1300	1098	Pfam	MT-A70	765	943	IPR007757	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso20g1300	Gso-Chr20	43018362	43025061	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso20g1300	K23960		-	gmx:100790586	2177.13

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso20g1300	20	43018362	43025061	Gso10g2076	10	47735882	47742499	GST