Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1268 ATGGTTAAGGTAACTATAGTTGGAAGGGTAAGCGATGGATTGCCTCTAGCACAAGGACTGAGATACATGAATGAAGAGTATGGATATCTTTCATGTTACAGGCAACAAGCAGAGTTCATACTCCGAGAATTTTCAAGGGGAGCATTAACAGCTCCCAAGATGACTATTCATATTGATAATTTCTGCTTCAACTACTTGGTCGAGAACGGAGTTGTTTTCATTGTGTTGTGTGAGTCCACGTACCCAAGAAAACTGGCCTTCCATTACCTACAAGATATACAAAAGGAGTTTGAGAAGTTTGATAAAACCCTCATAGGCAAAATCACAAGGCCATACAGCTTTGTCAAATTTGATGGTATAATCGCAAACATTAGCAGACAATACATTGATACAAGAACTCAGGCCAACCTATCAAAACTTAACGCTAACCGGAAACAAGATTTAGATATTGCCACTGAAGACATTTACAAAATTTTAGAAAGGAAGAGAAATTCAGAAACAATGAGAAGATTACCGGTTACTCCTCAACCTGAATCCACAATATGGTGCTCCCCACAACTTGAGGTGATTGCATTGAAATGGACACCTATTATGATCATTGTCATTACTTCGATGGCTCTTTTATGGGCTAGCTTAGCCCTCACAGATGACTTTATTGTTTGA 663 0.3876 MVKVTIVGRVSDGLPLAQGLRYMNEEYGYLSCYRQQAEFILREFSRGALTAPKMTIHIDNFCFNYLVENGVVFIVLCESTYPRKLAFHYLQDIQKEFEKFDKTLIGKITRPYSFVKFDGIIANISRQYIDTRTQANLSKLNANRKQDLDIATEDIYKILERKRNSETMRRLPVTPQPESTIWCSPQLEVIALKWTPIMIIVITSMALLWASLALTDDFIV* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1268 220 ProSiteProfiles Longin domain profile. 6 121 IPR010908 -
Gso20g1268 220 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 219 IPR044565 GO:0005484|GO:0006888|GO:0006890
Gso20g1268 220 SUPERFAMILY SNARE-like 1 128 IPR011012 -
Gso20g1268 220 CDD Longin 5 128 IPR010908 -
Gso20g1268 220 Gene3D Longin domain 1 159 - -
Gso20g1268 220 PANTHER SNARE-LIKE SUPERFAMILY PROTEIN 1 219 - -
Gso20g1268 220 SMART Longin_2 36 120 IPR010908 -
Gso20g1268 220 Pfam Regulated-SNARE-like domain 38 118 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1268 Gso-Chr20 42736246 42738459 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1268 K08517 - gmx:100781527 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1268 20 42736246 42738459 Gso10g2109 10 48099083 48101155 GST