Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1220 ATGGTTAGGCTATGGTGCTCTTCTCTCTTAATGACAATCTTATTCCAACAACTCATCAGATTGTGCATTTCTTGGAGTGTGCAAACCCCAACACCCCCATTGCCAATCCTCCCTCTCCCAACATATTCCCAGTTGCAATGGCAACAAAGGGAGATCATAATGTTCTTGCATTTTGGTGTGAACACATTCACTGACAGAGAATGGGGCACTGGCCAGGAAAACCCAGCAATCTTCAATCCAACAGGGCTCAACACCACCCAGTGGGCCACTGTGGCAGCAGATGCAGGAGTTTCATTAATGATATTAACTGCAAAACACCATGATGGCTTTTGCCTATGGCCTTCCAAGTACACTGAGCATTCTGTCATTAGCAGCCCCTGGCAAGGTGGCAAGGGTGATGTTGTTCAAGACTTTGTCAATGCAGCCACTGCACAAGGAATTGATGTAGGGATCTACCTTTCACCTTGGGATAGACATGACCCTAGATATGGCAATGATTTGCTCTACAACCAATACTACTTGGCTCAACTACAAGAGTTGCTCAAGAAATATTCAAATGTTAGAGAGATTTGGTTCGATGGAGCAAAGGGTGCCAATGCAAAAAATATGACCTATTACTTTTCAGATTGGTTTTCCATGGTGAAGGAGTTGCAGAGTTCCATCAACATCTTCTCTGATGCCGGTCCTGATGTTAGGTGGGTGGGAGATGAAACAGGTTCTGCAGGGTACACATGCTGGTCTACCATTAATCGAACCTCTCTATCCATTGGAAGTCCAGACATCATTCAGTATATAAATACTGGTGATCCAAAAGGGACTGATTGGCTACCTGCGGAATGTGATGTCTCCATTCGGCATGGATGGTTTTGGCATAAGTCAGAATCACCAAAAAAGCTAAGTGAACTACTTGACATTTATTACAATTCGGTTGGAAGAAATTGTGTGTTACTTCTAAATGTACCTCCTAATACAAGTGGGCTTATAACTGAAGCTGATGCTAATAGATTGAAAGAGTTTAGAAGTGCAATTAACACAATTTTTCATCAGAATCTTGCTGAGGATTGTTTTGTTAAAGTTAGTAGCCAAAGAAGGGGTTTCGGGCCAGAAAAGATGCTAGACAGCGAACACTTGTGGTCATATTGGGCCCCAAGGGATGATGATGGTGAAAAGGACCATTGGATTGAAATATGGGCCAAGGAAGGGAAATTCAGATTCAATGTGATTAGAATACAAGAGGCAATTGGTCTTGGTCAAAGGATCAAACGGCATGAAATCTATGTGGATGGTAAATTGATCATCAAAGCCACAACAGTGGGTTACAAGAGGCTTCATAGGCTTAATGGGGGTGAGGTGCACGCTCGTGTGGTGAGGATCAGAATCAGAAAGGCAAGAGGAGTGCCTCTTATTTCTTCCATTGGCTTGCATTATGATCCTTTCTGGCACTCAAAGTTTACTCCAACCTGA 1464 0.4317 MVRLWCSSLLMTILFQQLIRLCISWSVQTPTPPLPILPLPTYSQLQWQQREIIMFLHFGVNTFTDREWGTGQENPAIFNPTGLNTTQWATVAADAGVSLMILTAKHHDGFCLWPSKYTEHSVISSPWQGGKGDVVQDFVNAATAQGIDVGIYLSPWDRHDPRYGNDLLYNQYYLAQLQELLKKYSNVREIWFDGAKGANAKNMTYYFSDWFSMVKELQSSINIFSDAGPDVRWVGDETGSAGYTCWSTINRTSLSIGSPDIIQYINTGDPKGTDWLPAECDVSIRHGWFWHKSESPKKLSELLDIYYNSVGRNCVLLLNVPPNTSGLITEADANRLKEFRSAINTIFHQNLAEDCFVKVSSQRRGFGPEKMLDSEHLWSYWAPRDDDGEKDHWIEIWAKEGKFRFNVIRIQEAIGLGQRIKRHEIYVDGKLIIKATTVGYKRLHRLNGGEVHARVVRIRIRKARGVPLISSIGLHYDPFWHSKFTPT* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1220 487 Pfam Alpha-L-fucosidase 76 339 IPR000933 GO:0004560|GO:0005975
Gso20g1220 487 SUPERFAMILY (Trans)glycosidases 33 344 IPR017853 -
Gso20g1220 487 Gene3D - 356 475 - -
Gso20g1220 487 PRINTS Glycosyl hydrolase family 29 signature 99 115 IPR016286 GO:0004560|GO:0006004
Gso20g1220 487 PRINTS Glycosyl hydrolase family 29 signature 147 166 IPR016286 GO:0004560|GO:0006004
Gso20g1220 487 PRINTS Glycosyl hydrolase family 29 signature 301 322 IPR016286 GO:0004560|GO:0006004
Gso20g1220 487 Gene3D Glycosidases 35 353 - -
Gso20g1220 487 PANTHER OS09G0520800 PROTEIN 22 483 - -
Gso20g1220 487 PANTHER ALPHA-L-FUCOSIDASE 22 483 IPR000933 GO:0004560|GO:0005975
Gso20g1220 487 SUPERFAMILY Galactose-binding domain-like 349 466 IPR008979 -
Gso20g1220 487 SMART alpha_l_fucos 29 377 IPR000933 GO:0004560|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1220 Gso-Chr20 42180584 42183065 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1220 K01206 - gmx:100775293 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1220 20 42180584 42183065 Gso10g2158 10 48618019 48620546 GST