Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1084 ATGGTTTTGAAGTCAATGGTTGCTTCCGCGAGCGATCTAAGTCTCGTGAGTGTTGCAGGGAACCCTCCCCTTGATTTGAAGAATCGGGTTTTCGGTAGCCGCGTCATCAGCCTCGGATTTCGTTTCAACAAAGGTAGTAAATGGAAGGGGAATGAAAGGTTTAACTTTAAGGTTCGTGCAGCTGTGGAAGTGGGTGTGGAGAGATCGAAGAGCAAGGCTTTGGAGGGTGGTTTTGGGTTGGATGTGGTTTCAGAGGCAGAGTTAACGGTGAAGGGTTTTGCGGGGTTGAGGAAGACCAAGCTCGTGTGCACTGTTGGTCCTGCTTGCAGCTCTATGGAGGATCTTGAGAACTTGGCTCTTGGAGGCATGAGTGTTGCCAGGCTCAACATGTGCCATGGGACCAGGGAGTGGCACCGTGATGTGATTAGGAAGATCAAGAAGTTGAATGAGGAGAAAGGGTTCTGTGTTTCTGTAATGATTGACACTGAGGGTAGTCAGATTCATGTTGTTGATCATGGAGCTCCTTCCTCGGTTAAAGTTGAGGAAGGTTCAAATTGGGTGTTTACTGCTGAACATTATGAGGGTTCTCGTCCATTCACTGTTCAAACGAACTATAGAGGTTTTTCTGAAGGTACCGAAGTGGGTGATGAACTTGTAATTGATGGTGGAATGGCATGCTTTGAAGTCACAGAAAAGACTGGTAATGATTTGCATTGCAAATGCATAGATGCTGGTCTTTTCCTGCCTGGAGCCAAATTTAGTTTTTGGAGAGATGGAAAGCTTGTGAGGGGGAATAACAAGCTCCCCACTCTATCGACAAAGGATTGGGCTGACATTGACTTTGGTATAGCAGAGGGAGTTGATTTTTTTGCCTTATCCTTTGTCAATCATGCTGATTCTGTTAAGGATCTAAAGATGTACCTCTCTACGAAGTCAACCAAATCCATTAAAGTTTTGGCAAAGATAGAAAGCTTAGAATCCCTTCATAAACTGGAGGAAATAGTGCGAGCTTCTGATGGGATCATGGTGGCTCGGGGTGACCTTGGTGTCGAAATACCACTTGAACAGATTCCTACAGTCCAAGAGGATATAATTTACGTATGCAGACAATTAAACAAGCCAGTGATTGTAGCTTCTCAGCTTCTTGAGTCAATGGTCGAGTATCCAACGCCAACACGTGCTGAGGTAGCAGATGTTTCTGAAGCAGTTCGACAGTATGCTGATGCTTTAATGTTGTCTGGAGAGTCAGCTATTGGATCATATGGACGAAAAGCTTTGGCAGTCTTGGATATGGCTAGCAGTAGAATGGAATCATGGAATCGGGCGGAAAATAGACAAAGTCTTGTTAGCCACCATCAACTTGGAGAATCATTGCCAGAATGCATTACTGAGCAAATATGCAATTGTGCCGTTGAAATGGCCAACAACCTTGGTGTGGATGCCATCTTTGTGTACACAAAGTATGGACACATGGCATCGCTTCTATCGCGCAACCGCCCGAATCCTCCCATCTTTGCTTTCACCAACGATGACAGTACCCGCATGGCTCTGACTTTGCAATGGGGTGTTGTACCCATTCTGGTTGATTTGTCCGATGATGCTGAATCTAACATCTCAAAGTCTGTTCAACTTATGAAATCTAGAGGGTTGATCAGCCAAGGAGATGTTGTTCTAGTGGTCTCAGATGTTGCTCCAACACGTGCCTCTCCTATGGCTTTCCAGTCTATTCAGGTGAAGACTATTATCTAA 1749 0.4511 MVLKSMVASASDLSLVSVAGNPPLDLKNRVFGSRVISLGFRFNKGSKWKGNERFNFKVRAAVEVGVERSKSKALEGGFGLDVVSEAELTVKGFAGLRKTKLVCTVGPACSSMEDLENLALGGMSVARLNMCHGTREWHRDVIRKIKKLNEEKGFCVSVMIDTEGSQIHVVDHGAPSSVKVEEGSNWVFTAEHYEGSRPFTVQTNYRGFSEGTEVGDELVIDGGMACFEVTEKTGNDLHCKCIDAGLFLPGAKFSFWRDGKLVRGNNKLPTLSTKDWADIDFGIAEGVDFFALSFVNHADSVKDLKMYLSTKSTKSIKVLAKIESLESLHKLEEIVRASDGIMVARGDLGVEIPLEQIPTVQEDIIYVCRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGSYGRKALAVLDMASSRMESWNRAENRQSLVSHHQLGESLPECITEQICNCAVEMANNLGVDAIFVYTKYGHMASLLSRNRPNPPIFAFTNDDSTRMALTLQWGVVPILVDLSDDAESNISKSVQLMKSRGLISQGDVVLVVSDVAPTRASPMAFQSIQVKTII* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1084 582 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 90 439 IPR015813 GO:0003824
Gso20g1084 582 Pfam Pyruvate kinase, alpha/beta domain 464 563 IPR015795 -
Gso20g1084 582 PANTHER PYRUVATE KINASE 44 581 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1084 582 Gene3D - 99 429 IPR040442 -
Gso20g1084 582 ProSitePatterns Pyruvate kinase active site signature. 316 328 IPR018209 GO:0004743|GO:0006096
Gso20g1084 582 Pfam Pyruvate kinase, barrel domain 97 437 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1084 582 SUPERFAMILY PK beta-barrel domain-like 167 250 IPR011037 -
Gso20g1084 582 SUPERFAMILY PK C-terminal domain-like 458 564 IPR036918 -
Gso20g1084 582 Gene3D - 430 572 IPR036918 -
Gso20g1084 582 PANTHER PYRUVATE KINASE 44 581 - -
Gso20g1084 582 TIGRFAM pyruv_kin: pyruvate kinase 97 567 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1084 582 Gene3D - 166 268 IPR015806 GO:0004743|GO:0006096
Gso20g1084 582 PRINTS Pyruvate kinase family signature 154 170 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1084 582 PRINTS Pyruvate kinase family signature 287 301 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1084 582 PRINTS Pyruvate kinase family signature 318 344 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1084 582 PRINTS Pyruvate kinase family signature 345 369 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1084 582 PRINTS Pyruvate kinase family signature 370 394 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1084 582 PRINTS Pyruvate kinase family signature 395 413 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gso20g1084 582 PRINTS Pyruvate kinase family signature 414 430 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1084 Gso-Chr20 40589286 40593595 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1084 K00873 - gmx:100780644 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1084 20 40589286 40593595 Gso10g2272 10 49791291 49795570 GST
Gso1g1716 1 53918192 53924804 Gso20g1084 20 40589286 40593595 PCT