Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1923 ATGGCATCGCGCGTCAGCATTGGCAACCTTACCTCCTCCGCGCCGTATATTAATTCCCCTCACTTTCGCTCACCACTTAAGATTTCCAACAACCCCTCTCTGCAAAACGCTTCGCATAAGGTACTTATGCGCGATAAGACTGTACTGGTAACCGGCGGAGCCGGTTACATCGGCAGCCACACCGTTCTTCAGCTCTTGCTCGGAGGTTTCAGAGCCGTCGTCCTCGACAACCTCGAAAATTCCTCCGAGGTTGCCATCCACAGAGTCAGGGAGCTCGCCGGCGAATTTGGGAACAACCTCTCCTTTCACAAGGTGGACCTACGGGACAGAGCTGCTCTAGACCAAATATTTTCTTCCACACAATTCGATGCTGTCATACATTTTGCTGGACTGAAAGCAGTAGGAGAAAGTGTGCAAAAACCTTTACTATACTATAACAACAACTTGACTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAGCTCGTGTTTTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGCACAGAAGAGTTCCCTCTGTCAGCAATGAACCCATATGGACGAACTAAGCTTATCATTGAAGAAATTTGCCGTGATGTCCACTGTGCAGAGCCAGATTGTAAAATAATTTTGTTAAGATACTTCAACCCAGTTGGTGCACACCCCAGTGGTTATATTGGGGAGGATCCTCGTGGAATTCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAAGTGATGGCACTGGGGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCATTGCTTAAACTAGATGAACCTAATATAGGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAGAGCTTTTGAAATGGCATCTGGAAAGAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAGGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGAGATCAGGGCTCCACCGATTAA 1176 0.4592 MASRVSIGNLTSSAPYINSPHFRSPLKISNNPSLQNASHKVLMRDKTVLVTGGAGYIGSHTVLQLLLGGFRAVVLDNLENSSEVAIHRVRELAGEFGNNLSFHKVDLRDRAALDQIFSSTQFDAVIHFAGLKAVGESVQKPLLYYNNNLTGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAMNPYGRTKLIIEEICRDVHCAEPDCKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYNTSDGTGVRDYIHVVDLADGHIAALLKLDEPNIGCEVYNLGTGKGTSVLEMVRAFEMASGKKIPLVMAGRRPGDAEIVYASTKKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGDQGSTD* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1923 391 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 43 385 - -
Gso1g1923 391 TIGRFAM galE: UDP-glucose 4-epimerase GalE 48 382 IPR005886 GO:0003978|GO:0006012
Gso1g1923 391 CDD UDP_G4E_1_SDR_e 47 376 IPR005886 GO:0003978|GO:0006012
Gso1g1923 391 PRINTS Nucleotide sugar epimerase signature 74 90 - -
Gso1g1923 391 PRINTS Nucleotide sugar epimerase signature 278 293 - -
Gso1g1923 391 PRINTS Nucleotide sugar epimerase signature 304 319 - -
Gso1g1923 391 PRINTS Nucleotide sugar epimerase signature 343 360 - -
Gso1g1923 391 Gene3D - 236 377 - -
Gso1g1923 391 Gene3D - 48 317 - -
Gso1g1923 391 PANTHER UDP-GLUCOSE 4-EPIMERASE 43 385 - -
Gso1g1923 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 384 IPR036291 -
Gso1g1923 391 Pfam GDP-mannose 4,6 dehydratase 49 372 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1923 Gso-Chr1 55946334 55950533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1923 44 361 Miscellaneous Gene Families AT4G00110 27.761 3.23e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1923 K01784 - gmx:100818509 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1923 1 55946334 55950533 Gso1g1923 1 55946334 55950533 ECH