Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1912 ATGGCGAAGGAGTTGTTGACTCTTGATAATGGCACAACCTGCACATCATGGAACTATTCTGGCACCAGGCTCGCTGCGGGTTCCGTTGATGGCACGCTTTCAATCTTCGATTCCCGCGACCCACCTTCATCTTCTTCCCTCCATTCTACTTTCAAATCTAGGGTTCTAGAAGGAAACATCGTGAAGATTGTTTGGATTCCGCCAGAGTATGGTGATGCAGTTGCGTGCATTTCTGCCGATGGAATTGTTTCATTGTGGGAGGAGGTCGCAGAAGATTCCCAGTCTCTTCAGTGGAAGATGTTCAAAAGCTTTGGAAACAGTTCAAGCAAAGTCCTTGATGCTCAATTTGGAATCTCTCTGACTAGTTTGAAAATGGTTGCTGCATATTCAGATGGGAATGTAAGAGTTTTTGAGCTCTCGGATCCCTTGGAACTGAGAAACTGGCAGCTTCAGGCTGAATTTCAAAATGTTATCGAGTCAGTGTCTTCGTTTGGAAAGGCCTCATGCCTCTCAGCATCCATATCTTGGAATCCACAAAAAGGTGGAAGCCAGGAGTCCAGCTTCCTTGTAGGCTTCAATTCAAATACATCAGAGCTTAATTCTTCTAAGGTTTGCGAATTTGATCAGGCTCATCAAAGATGGCTTCCTGTGGCAGAACTGGCACTCCCTGAGGAGAAGGGTGATCAGCTTTATGCTGTTGCATGGGCACCAAATATTGGCAGACCATATGAGATCATTGCGGTTGCAACCCACAAGGGACTTGCAATATGGCATCTTGGATTGAACCCTGATCATGATGGAAGACTCCCAGTAGAGAGAGTTGCACTACTGTCAGGTCACGAGGGCATGGTGTGGCAAATGGAGTGGGATATGAGTGGAATGACTTTGGCTACTACAGGTCATGATGGAATGGTCCGATTATGGCAGTCGAATCTCAATGGCGTTTGGCATCAGCAAGCTGCATTTGAACCCACTTCTTAG 981 0.4638 MAKELLTLDNGTTCTSWNYSGTRLAAGSVDGTLSIFDSRDPPSSSSLHSTFKSRVLEGNIVKIVWIPPEYGDAVACISADGIVSLWEEVAEDSQSLQWKMFKSFGNSSSKVLDAQFGISLTSLKMVAAYSDGNVRVFELSDPLELRNWQLQAEFQNVIESVSSFGKASCLSASISWNPQKGGSQESSFLVGFNSNTSELNSSKVCEFDQAHQRWLPVAELALPEEKGDQLYAVAWAPNIGRPYEIIAVATHKGLAIWHLGLNPDHDGRLPVERVALLSGHEGMVWQMEWDMSGMTLATTGHDGMVRLWQSNLNGVWHQQAAFEPTS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1912 326 Gene3D - 9 323 IPR015943 GO:0005515
Gso1g1912 326 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 309 IPR001680 GO:0005515
Gso1g1912 326 PANTHER NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER 6 325 IPR037363 GO:0005198
Gso1g1912 326 SMART WD40_4 1 37 IPR001680 GO:0005515
Gso1g1912 326 SMART WD40_4 97 138 IPR001680 GO:0005515
Gso1g1912 326 SMART WD40_4 44 87 IPR001680 GO:0005515
Gso1g1912 326 SMART WD40_4 270 309 IPR001680 GO:0005515
Gso1g1912 326 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Gso1g1912 326 Pfam WD domain, G-beta repeat 13 37 IPR001680 GO:0005515
Gso1g1912 326 PANTHER NUCLEOPORIN SEH1 6 325 IPR037597 GO:1904263
Gso1g1912 326 SUPERFAMILY WD40 repeat-like 10 309 IPR036322 GO:0005515
Gso1g1912 326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1912 Gso-Chr1 55838284 55841536 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1912 K14299 - gmx:100812825 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1912 1 55838284 55841536 Gso1g1912 1 55838284 55841536 ECH