Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1907 ATGGATGAAGACTTTGTTGATGAGGCAACCCAATTAGAAGTTGCCGAGGAATCACAGCGCCAAAACAAAGATTCACCCCACCCGGAATGCCGAAAAATCTTAAAATCCCTAGAAGCCTTCATCCCTGTTAAGCAGGACTACTCCCAGATACCACCTCGGGAATATGATGGCATTCTACATGGTAAAAATGTAGTTGAAGGTATTGATCATGCAGATACATCACAGCATCCTCATGTAAGCCTTTTTATGGATGATGCTGATGTTATGGTTGAAGAGTTAACAGTAAAAAGTTACAATGGCTCAAGTTTGGATATTGGTACATCAAACAACCGAGAGCAGATATATAATCGGCAGAACCATTGGCAAAATCTTTATCAGCTAGCAAGTAATTCAGGAATTGGAAATTCACTAAGTGATATTGGAACCAGAAACAGTGTCCCAGCTACATCTAGTGCTCGGGAGGATATTGGATCCTCATCTTTCCCTGAGATGTTAGCTAGAAAATCTCTCAGTGATGGCCAGAGCAATGTCATGGAACACTTGGCATCTGCTGAAAATAAAGAGGGTGCAGGTGATGTTCGTCAAGGAACACGGAAAAAAATTATATCCCAATCAGGATTTGCTGAGTTTTTCATAAAAAATACACTGAGGGGTAAGGGTATTGTATATAAAGGTCCATCTTCTGATGGCTTCTGTGTTCAGTCCAGAGAGCAAAACTGGATGAAGATTGGCATTGATGCAGATCAGAATAGGATGAAAACTGGCATTGGTGCGGATCAGAATCGGCTGAAGACTGTCATTGATGCGGATCAGAATCAGCTAAAGACTGGCATTGATGCGGATCAGAATCGGCTAAAGACTGGCATTGATGCAGACCAGAATCAGATGAAGGCTAGCATTGGCACAGATCAGAATCAGATGAAGAATCACAGTGGTACTGATCAGAAACAGATGAAGACTGGCATTGTTACTCACTTGAACTCTAATCAATCAGTGGGCTATGGTTCCAAAACTGCAAAGTTTCCTTCTTATTGTGGTGCTATGCCTAGATCTGGCAGGTCTGATTGTGTTGGTGTGACTTTGAGAGAATGGTTGAAACACGGGCACCACAAAGCAAGCAAGGTGGAAAGTTTGAATATATTTAGAAAGATTGTGGATTTGGTGGACATTTGTCACTCTCAGGGAGTTGCATTGCATAACCTGTGTCCATCTTATATTAAATTGTCGCCATCAAACCAGATCATGTACCTTGGTTTACCTGTTCAAAAACAGATGGTGGATAGTGTTGTAAATTCTGAAGTTGTTCACTTAGATAATTCTTTTATTAGAAAAAGGCTGTCAGAGCAAGTAACATTTCCCTCCCTTGATATGGGGTCAAAGAAAAAAAAATTTAATGAGAATGTGAGAGTTACTGGTGGTGACTTGTGCCTCGAAACTGCAAGTGATAGGAAACTTCATAGTCATACAGTTGGATCACAAGATTATTACAATGAATATGAGGAAGGTACCCAATTTTCTAAATATAACATTGGAAGAATGTCTAGCATCCCTCGCGTATCTAATGCAGGTCAAATGCCATTGACTTCATGTGAAAAATTTGAAAATAAATGGTACACAAGTCCTGAGGGAGGTTACACAACATCATCAAATATCTATTGTCTTGGTGTTCTCCTTTTTGAGTTACTTGGTCATTTTGACTCTGAAAGAACACATATTGCAGCCATGTCTGATCTTCGTCATAGGATTCTTCCTCCAATTTTCCTATCAGAAAATCCTAAGGAAGCTGGCTTTTGTCTTTGGTTGTTGCATCCTGAACCATCATCACGCCCATCAACAAGGGAAATCCTTCAATCTGAATTGATTAATGGATTGCAAGAGTTGTTTAGTGAGGAATTGTCATCAAGTATTGACCAAGAAGATGCAGAATCTGAATTGTTATTGCATTTCCTCGTTTTGTTAAAAGAGCAGAAGCAGAACAATGCCTTCAAACTGGTAGAAGAAATCAAGTGCTTGGAATCAGATATAGAAGAGGTGGAGAGGAGGCATGACTCAAGAAAATCCTTGGTTTCCTCAGGCTTGCAGAATGATTACTCTTGTCAGAAAGAGATTATGCCTCTTAAAAAGGAATCTTTGAGTTTGGAAATGCTGCCCTCGATATCCCCAATCTCTAATTCAAATAAAGTGAGATTGATGAGAAGTATATGCCATCTTGAAGGTGCTTATTTTTCCACGAGATCCAAACTTCAGCTTTCTGAAACAGATGCTTCAACTCACCCTGATAAAGATATACTAAGAAATCGTGAGAACCAGAATGTGGCCCAAAAAAGCGAGGAACAACCTAAGAAAGATACTTTAGGGGTATTCTTTGATGGTTTGTGCAAGTATGCACGTTATTGCAAGTTTGAAGTGCGGGGTGTACTAAGAAATGTTGATTTTAACAATCCTGCAAATGTAATTTGCTCTCTAAGCTTTGACCGGGATGCAGATTACTTTGCTTCTGCTGGGATATCTAGGAAAATAAAAATTTTCGAGTTTAGTGCACTTTGCAATGACTCTGTTGATATCCATTATCCTGCGGTTGAGATGTCAAACAGATCAAAACTCAGCTGTGTTTGCTGGAATAACTATATTAAGAACTATCTCGCTTCTACAGATTATGACGGTATAGTGAAGTTATGGGATGCTAGTACAGGTCAAGAATTTTCTCAATTCACTGAACATGAGAAGAGGGCTTGGTCTGTTGACTTCTCTGCAGTATGCCCTACAAAATTTGCCAGTGGAAGTGATGATTGTACTGTCAAGCTGTGGAGCATCAGTGAGAGAAACTGTTTAGGCACAATCAGGAATGCTGCTAATGTCTGCTGTGTTCAGTTCTCTGCTCATTCCTCCCATTTGCTGGCCTTTGGATCTGCGGATTACTCAACATATTGTTATGATCTTCGCAATCTTAGAAGTCCCTGGTGTGTACTGGCTGGCCATCGTAAAGCTGTGAGCTATGTCAAATTCTTGGACTCTGAAACACTTGTTTCTGCTTCTACTGATAATACATTGAAGATCTGGGATCTCAATAAAACCTCTCCTGTGGGTGCATCCATTAATGCTTGCAGCCTAACTCTGTCGGGACATACTAATGAGAAGAATTTTGTGGGTCTATCGGTGGCTGATGGATATATTGCATGTGGTTCAGAAACAAATGAGGTTTACACCTACTATAGATCGCTTCCCATGCCAGTCACTTCACACAAATTTGGGTCCATTGATCCCATTTCTGGTAAAGACACTGATGATGACAATGGTCAGTTTGTTTCAAGTGTGTGCTGGAGAGGGAAATCGGGCATGCTTATTGCGGCCAATTCAAGTGGATGTGTAAAAGTGTTACAGATGGTTTAA 3390 0.4029 MDEDFVDEATQLEVAEESQRQNKDSPHPECRKILKSLEAFIPVKQDYSQIPPREYDGILHGKNVVEGIDHADTSQHPHVSLFMDDADVMVEELTVKSYNGSSLDIGTSNNREQIYNRQNHWQNLYQLASNSGIGNSLSDIGTRNSVPATSSAREDIGSSSFPEMLARKSLSDGQSNVMEHLASAENKEGAGDVRQGTRKKIISQSGFAEFFIKNTLRGKGIVYKGPSSDGFCVQSREQNWMKIGIDADQNRMKTGIGADQNRLKTVIDADQNQLKTGIDADQNRLKTGIDADQNQMKASIGTDQNQMKNHSGTDQKQMKTGIVTHLNSNQSVGYGSKTAKFPSYCGAMPRSGRSDCVGVTLREWLKHGHHKASKVESLNIFRKIVDLVDICHSQGVALHNLCPSYIKLSPSNQIMYLGLPVQKQMVDSVVNSEVVHLDNSFIRKRLSEQVTFPSLDMGSKKKKFNENVRVTGGDLCLETASDRKLHSHTVGSQDYYNEYEEGTQFSKYNIGRMSSIPRVSNAGQMPLTSCEKFENKWYTSPEGGYTTSSNIYCLGVLLFELLGHFDSERTHIAAMSDLRHRILPPIFLSENPKEAGFCLWLLHPEPSSRPSTREILQSELINGLQELFSEELSSSIDQEDAESELLLHFLVLLKEQKQNNAFKLVEEIKCLESDIEEVERRHDSRKSLVSSGLQNDYSCQKEIMPLKKESLSLEMLPSISPISNSNKVRLMRSICHLEGAYFSTRSKLQLSETDASTHPDKDILRNRENQNVAQKSEEQPKKDTLGVFFDGLCKYARYCKFEVRGVLRNVDFNNPANVICSLSFDRDADYFASAGISRKIKIFEFSALCNDSVDIHYPAVEMSNRSKLSCVCWNNYIKNYLASTDYDGIVKLWDASTGQEFSQFTEHEKRAWSVDFSAVCPTKFASGSDDCTVKLWSISERNCLGTIRNAANVCCVQFSAHSSHLLAFGSADYSTYCYDLRNLRSPWCVLAGHRKAVSYVKFLDSETLVSASTDNTLKIWDLNKTSPVGASINACSLTLSGHTNEKNFVGLSVADGYIACGSETNEVYTYYRSLPMPVTSHKFGSIDPISGKDTDDDNGQFVSSVCWRGKSGMLIAANSSGCVKVLQMV* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1907 1129 Pfam WD domain, G-beta repeat 899 937 IPR001680 GO:0005515
Gso1g1907 1129 Pfam WD domain, G-beta repeat 989 1021 IPR001680 GO:0005515
Gso1g1907 1129 MobiDBLite consensus disorder prediction 752 778 - -
Gso1g1907 1129 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 990 1023 - -
Gso1g1907 1129 PANTHER PROTEIN SPA1-RELATED 2 1 1129 IPR044630 GO:0009640
Gso1g1907 1129 Gene3D Transferase(Phosphotransferase) domain 1 357 629 - -
Gso1g1907 1129 ProSitePatterns Trp-Asp (WD) repeats signature. 881 895 IPR019775 -
Gso1g1907 1129 MobiDBLite consensus disorder prediction 13 28 - -
Gso1g1907 1129 ProSitePatterns Trp-Asp (WD) repeats signature. 1008 1022 IPR019775 -
Gso1g1907 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 861 903 IPR001680 GO:0005515
Gso1g1907 1129 MobiDBLite consensus disorder prediction 1 28 - -
Gso1g1907 1129 PRINTS G protein beta WD-40 repeat signature 881 895 IPR020472 -
Gso1g1907 1129 PRINTS G protein beta WD-40 repeat signature 924 938 IPR020472 -
Gso1g1907 1129 PRINTS G protein beta WD-40 repeat signature 1008 1022 IPR020472 -
Gso1g1907 1129 SUPERFAMILY WD40 repeat-like 812 1127 IPR036322 GO:0005515
Gso1g1907 1129 Gene3D - 789 1129 IPR015943 GO:0005515
Gso1g1907 1129 Coils Coil 654 681 - -
Gso1g1907 1129 PANTHER PROTEIN SPA1-RELATED 2 1 1129 - -
Gso1g1907 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 904 946 IPR001680 GO:0005515
Gso1g1907 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 990 1030 IPR001680 GO:0005515
Gso1g1907 1129 MobiDBLite consensus disorder prediction 754 778 - -
Gso1g1907 1129 SMART WD40_4 940 979 IPR001680 GO:0005515
Gso1g1907 1129 SMART WD40_4 1088 1127 IPR001680 GO:0005515
Gso1g1907 1129 SMART WD40_4 854 894 IPR001680 GO:0005515
Gso1g1907 1129 SMART WD40_4 800 844 IPR001680 GO:0005515
Gso1g1907 1129 SMART WD40_4 983 1021 IPR001680 GO:0005515
Gso1g1907 1129 SMART WD40_4 1032 1071 IPR001680 GO:0005515
Gso1g1907 1129 SMART WD40_4 897 937 IPR001680 GO:0005515
Gso1g1907 1129 SUPERFAMILY Protein kinase-like (PK-like) 356 627 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1907 Gso-Chr1 55800148 55809831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1907 821 966 Miscellaneous Gene Families AT5G08390 26.000 6.08e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1907 K16240 - gmx:100784300 2262.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1907 1 55800148 55809831 Gso1g1907 1 55800148 55809831 ECH