Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1861 ATGAACAACTTCAAGTTAGGGGTAGATGTGGTTAGTGCTCACAATCTATTACCTAAAGATGGACAAGGTTCATCCAATGCCTTTGTGGAACTTTACTTTGATGGCCAAAAGTACCGTACGACCATCAAAGAAAGGGATCTTAACCCAGTTTGGAATGAGAGCTTCTACTTCAATATATCTGACCCTTCTAATCTTCACTATCTCACACTTGATGCCTATGTCCACTGCCATACCAAAGCTACTAACTCCACTTCATTTCTTGGCAAGGTTAGTCTTACCGGGACTTCTTTTGTCCCTTACTCTGATGCAATTGTCTTGCACTATCCATTGGAGAAACGTGGTATTTTCTCTCGTGTAAGAGGAGAGATTGGCCTTAAAGTTTACATCACTAATGATCCAAACATAAAATCATCCATTCCAACTCCTGCTGTTGAGTCCATGCCAACAAATAATTCAAGCTCAACACATGCAGAAGTTCGAGCACCTGCAAGCACAATGACAAACAATTTTCCAAATGAAAAGGTTGATTCAAGACACACATTTCATCATCTCCCTAACACAAGCCATCACCAGCACCAACAGCATTCCTCTGGCTTTGCAGATACTCATTATGTAACAAAGTATGAAGCCGATGCAATGAAATCTGAACCACAACCTATGAAGCTAGTACGCACTGCTACATCAGTACAACCAGTTGATTTTGCACTTAAAGAAACAAGTCCCTATCTTGGTGGGGGAAGAGTTGTTGGCGGCCGTGTTGTTCATAAAGACAAGACTGCTAGTACATATGATCTTGTGGAAAGGATGTACTTTCTGTATGTCAGGGTAGTCAAGGCTCGTGAGCTTCCTGCTATGGATGTTACTGGTAGCCTTGATCCATTTGTTGAGGTGAGAATTGGCAATTACAAAGGTATCACTAGACACTTTGATAAGAATCAGAGTCCTGAATGGAATCAGGTGTTTGCATTTTCAAAGGACCGGATGCAAGCATCTGTACTTGATGTTGTGATCAAGGACAAGGATCTCATCAAAGATGATTTTGTAGGCATTGTGAGATTTGACATCAATGAGGTTCCTCTGAGAGTACCACCAGACAGCCCTTTGGCACCAGAGTGGTATCGCCTTGAGGACAAGAAAGGGGAGAAGATTAAAGGTGAGTTGATGCTTGCTGTTTGGATTGGCACTCAAGCAGATGAGGCTTTTTCTGATGCATGGCATTCAGATGCAGCCACACCTGTTGACAGCACACATGCTATCTCTGCAGTGATGCGTTCAAAGGTCTATCATGCACCGAGGCTATGGTATGTGCGTGTCAATGTTGTGGAGGCACAAGACTTGGTTCCTACAGAGAAAAACCGTTTCCCAGATGTGTATGCCAAGGTGCAGATAGGAAACCAAGTGCTGAAAACAAAGACAGTTCCAGCCCGAACACTAAGCGCTCTCTGGAATGAAGATCTTTTGTTTGTTGCTGCTGAACCTTTTGAAGATCATTTAACTATTTCAGTTGAAGATCGGGTTAGTCCTGGAAAAGATGAGGTCATTGGGAGGATCATCATACCACTGAACTCCGTGGAAAGGCGTGCAGATGATAGAATCATTCATTCTAGATGGTTCAACCTGGAAAAGCTAGTTGCTATAGATGTTGATCAGTTGAAGAAAGAGAAGTTCTCAAGCAGAATTCAGCTCCGGTTATGTCTAGATGGAGGATATCATGTTCTTGATGAGTCAACTCATTACAGCAGCGATCTCCGCCCCACGGCAAAGCAGCTATGGAAGCCACCAATTGGGGTTCTAGAACTTGGAGTGCTGAATGCTGTAGGACTCCACCCAATGAAAACAAGGGATGGTAGGGGCACATCTGACACATACTGTGTAGCAAAATATGGTCACAAATGGGTCAGAACAAGGACCATTGCTGATAATCTGTGTCCAAAATACAACGAGCAATACACTTGGGAGGTTTTTGATCATGCCACGGTTCTTACTGTTGGTGTCTTTGACAACAGCCAGCTCGGGGAAAAGGGTAATGGTTCTTCAAAGGACTTGAAAATTGGGAAGGTCAGAATTCGCATCTCTACACTGGAAACAGGAAGGATTTACACTCACTCATATCCATTGTTGGTTCTTCACCCAACCGGGGTTAAGAAGATGGGTGAACTTCACTTGGCAATACGGTTTTCATGCACTTCTTTAGCAAACATGCTTTACCTATACTCACGACCACTGCTGCCAAAAATGCACTACGTAAGGCCTTTCTCTGTGACGCAGCTAGACATGCTGCGTCACCAAGCAATGAACATAGTGGCGGCTAGACTCGGCCGAGCAGAGCCACCACTTCGCAAGGAAGTGGTGGAATACATGTCAGATGTGGACTCTCACCTTTGGAGCATGCGGCGAAGCAAGGCGAATTTCTTCCGAGTGATGAGCGTCTTCTCTGGTGTGTTTGCTGTTGGAAAATGGTTTGGTGATATCTGCATGTGGAGGAATCCTATCACAACAGCGCTGGTTCATGTGTTGTTTCTCATGCTTGTTTGCTTCCCGGAATTGATCTTGCCCACTGTTTTTCTCTACATGTTCTTGATAGGGGTATGGAACTTTAGATATAGACCAAGGTACCCTCCTCACATGAACACAAGAATCTCACAGGCTGAGGCAGTGCACCCGGATGAGTTAGATGAAGAGTTTGACACTTTCCCTACTAACCGGAGCCCGGACCTAGTGAGAATGAGGTATGATCGTTTGAGGAGTGTGGCTGGAAGGATTCAAACAGTGGTTGGTGATTTGGCCAGCCAGGGAGAGAGGATTCAGGCACTGTTAAGCTGGAGAGACCCGCGTGCTACATCCATATTTATTACATTGTGTCTCCTATCTGCGTTGGTGCTCTATGTTACTCCTTTTCAAGCAGTGGCTGGTTTGGCAGGGTTTTACATTATGAGGCATCCCAGATTTCGCCACAGGCTGCCATGTACCCCAGTCAACTTCTTCCGGCGCCTCCCTGCAAGAACAGATTGTATGCTATAA 3021 0.4479 MNNFKLGVDVVSAHNLLPKDGQGSSNAFVELYFDGQKYRTTIKERDLNPVWNESFYFNISDPSNLHYLTLDAYVHCHTKATNSTSFLGKVSLTGTSFVPYSDAIVLHYPLEKRGIFSRVRGEIGLKVYITNDPNIKSSIPTPAVESMPTNNSSSTHAEVRAPASTMTNNFPNEKVDSRHTFHHLPNTSHHQHQQHSSGFADTHYVTKYEADAMKSEPQPMKLVRTATSVQPVDFALKETSPYLGGGRVVGGRVVHKDKTASTYDLVERMYFLYVRVVKARELPAMDVTGSLDPFVEVRIGNYKGITRHFDKNQSPEWNQVFAFSKDRMQASVLDVVIKDKDLIKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTHAISAVMRSKVYHAPRLWYVRVNVVEAQDLVPTEKNRFPDVYAKVQIGNQVLKTKTVPARTLSALWNEDLLFVAAEPFEDHLTISVEDRVSPGKDEVIGRIIIPLNSVERRADDRIIHSRWFNLEKLVAIDVDQLKKEKFSSRIQLRLCLDGGYHVLDESTHYSSDLRPTAKQLWKPPIGVLELGVLNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTIADNLCPKYNEQYTWEVFDHATVLTVGVFDNSQLGEKGNGSSKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSLANMLYLYSRPLLPKMHYVRPFSVTQLDMLRHQAMNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRVMSVFSGVFAVGKWFGDICMWRNPITTALVHVLFLMLVCFPELILPTVFLYMFLIGVWNFRYRPRYPPHMNTRISQAEAVHPDELDEEFDTFPTNRSPDLVRMRYDRLRSVAGRIQTVVGDLASQGERIQALLSWRDPRATSIFITLCLLSALVLYVTPFQAVAGLAGFYIMRHPRFRHRLPCTPVNFFRRLPARTDCML* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1861 1006 ProSiteProfiles C2 domain profile. 579 704 IPR000008 -
Gso1g1861 1006 SMART C2_3c 435 533 IPR000008 -
Gso1g1861 1006 SMART C2_3c 5 106 IPR000008 -
Gso1g1861 1006 SMART C2_3c 271 367 IPR000008 -
Gso1g1861 1006 SMART C2_3c 597 703 IPR000008 -
Gso1g1861 1006 Pfam Plant phosphoribosyltransferase C-terminal 851 1006 IPR013583 -
Gso1g1861 1006 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 434 587 IPR035892 -
Gso1g1861 1006 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 4 1006 - -
Gso1g1861 1006 ProSiteProfiles C2 domain profile. 413 538 IPR000008 -
Gso1g1861 1006 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 596 729 IPR035892 -
Gso1g1861 1006 MobiDBLite consensus disorder prediction 140 174 - -
Gso1g1861 1006 Pfam C2 domain 434 539 IPR000008 -
Gso1g1861 1006 Pfam C2 domain 597 706 IPR000008 -
Gso1g1861 1006 Pfam C2 domain 5 93 IPR000008 -
Gso1g1861 1006 Pfam C2 domain 272 366 IPR000008 -
Gso1g1861 1006 Gene3D C2 domain 1 130 IPR035892 -
Gso1g1861 1006 Gene3D C2 domain 253 393 IPR035892 -
Gso1g1861 1006 Gene3D C2 domain 416 566 IPR035892 -
Gso1g1861 1006 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Gso1g1861 1006 CDD C2A_MCTP_PRT_plant 5 130 - -
Gso1g1861 1006 ProSiteProfiles C2 domain profile. 253 373 IPR000008 -
Gso1g1861 1006 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 270 409 IPR035892 -
Gso1g1861 1006 CDD C2B_MCTP_PRT_plant 271 395 - -
Gso1g1861 1006 Gene3D C2 domain 593 730 IPR035892 -
Gso1g1861 1006 CDD C2C_MCTP_PRT_plant 435 585 - -
Gso1g1861 1006 CDD C2D_MCTP_PRT_plant 597 723 - -
Gso1g1861 1006 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 142 IPR035892 -
Gso1g1861 1006 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 4 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1861 Gso-Chr1 55368447 55373935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1861 165 1006 Lipid Metabolism Gene Families AT4G11610 77.933 0.0 1404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1861 - - gmx:100777951 1969.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1861 1 55368447 55373935 Gso1g1861 1 55368447 55373935 ECH