Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1834 ATGGATGATGACCTTTTACAGAGGAACAAAACACCATCTGTTGTCATAAAAGCGATAAAGTTCGATGTCTTAACTGAAGAAGATATAGAGAATATCTCTGTTTTGGAGATAAATGCAGCCGGGCAGGTCACTGGGTCAAATTTGGGATTGCCAAATGCATCTGATGAGTGTGCCACATGTGGCACTAAAGACAAAAAGTTCTGTGAAGGTCATTTTGGAGTAATCAAATTTCCTACTCCCATACTCCATCCATATTTTATGTCAGAAATTGCGCACATCTTGAACAAGATTTGCCCTGTTTGTAAATCTATTCGTCACAAATCCAAGGGTGCTCGATTAATCTATGGAACCAAGCGGTCTAATGATTGCAATTATTGTTCTGTGTATCCATCAATGCAATTTAGAGTTTCCTCCAACGATCTCTTTAGAAGAACTGCAATTATTGTTGAAGTAAAGGCTTCAAAGAAAACTTTGGGAACAGAAATACCTGCTGATTTTTGGAATTTTATTCCTTGTGATGCTCAACAAGAAGAAAATTATGTAAATAGAAGGGTTTTATCCCCTGTGCAGGTTAATTATTTGTTGAATGATGTTGATCCAGACTTTATTGAAAAATATATTCCAAGAAAGAATTTGCTGTGTCTTAATTGCTTCCCGGTGACTCCAAATTGTCATCGTGTGACAGAAGTCCCTTATGCAATTTCTAGTGGAAGCCGGTTGAGTTTTGATGACAGGACTCGATCTTGTAAGAAATTGGTTGATTTCAGGGGTACAGCCAATGAATTAAGTTCTCGTGTTTTGGATTGCCTGAGGATCTCTAAGCTAAATCCTGATAAAACCCCAAATAGTATTTTTGCTGATATCCAGCAAAGAAAGATTGGAGAAAATGCTTTCAATTCTTCTGGTTTAAGATGGATAAAAGATGTGGTTCTTGGAAAACGCAATGACAGTTCATTCCGTACTGTGGTTGTTGGTGATCCAGACCTTGAGCTTAGTGAAATTGGTATACCTTGTCATATTGCTGAAAGTTTGCAGGTTTCTGAGTATGTGAATAGGCAGAATAGGGAGAAGCTACTTTATTGTTGTGAGCTACACTTGTTAGAGAAGGGGAAAATAAATGTCTGCAGAAAGGGTAGTATAGTTCATCTGTATAAAAAGGAAGATCTACAAATAGGTGACAAATTTTATAGGCCTCTTGCTGATGGGGATAAAGTGCTGATAAATAGGCCCCCTTCCATACATCAACATTCTATGATTTCTCTCACAGTTAGGGTCCTTCCAATATCTTCTGTAGTGTGTATTAACCCACTCTGTTGTTCCCCACTACGTGGGGATTTTGATGGTGATTGCCTTCACGGGTATATTCCACAATCGGTTACTGCAAGAATTGAGCTTAATGAGCTGGTTGCTTTAGATAGGCAATTGATTAATGGGCAAAGTGGTAGAAATCTTCTTTCACTTTCCCAAGATAGTTTGACTGCTGCATATTTGCTAATGGAAGATGGGGTCCTTTTGAATGTTTATCAAATGCAGCAGCTTCAAATGCTTTCTATTTCTAACAAAAGATTAATACCTCCTGCAGTTGTTAAAGCTCCCTCTAGTAATAGCTCACTTTGGAATGGGAAGCAATTATTCAGCATGCTTTTGCCGTATGATTTTGACTATTCTTTTCCTTCAGATGGTGTTGTTGTTAGTGATGGAGAGCTTGTATCTTCTTCTGAGGCTTCTGGTTGGTTACGCGATTCTGACTACAATGTTTTTCAGAGTCTTGTGGAACATTATCAAGGGAAGACTCTAAACTTTTTGTATGCAGCACAAAAAGTTCTGTGTGAGTGGCTGTCTATGACAGGTTTTAGTGTTTCACTCTCTGATTTGTACCTTTCTTCTGATTCGTATGCACGGGAAAACATGATAGAGGAAATCTTTTATGGCTTAAAAGATGCAGAGCGGGCTTGTAATTTCAAGCAGCTATTGTTGGATTATTATTGTGATTTTCTGTCAGGAAGTCTTCAAGAGAGTGAAAATGCTATCACTGTTAATGCAGATCGTCTGAATTATGAAAGACAAATATCTGCTTCTCTCAGTCAAGCGTCAGTTGATGCTTTTAGGCAAGTTTTTCGCAATATTCAAAGTTTAGCTGATAAATATGCATGCAAGGGAAATTCTTTCCTTGCAATGTTTAAGGCTGGAAGCAAGGGTAATTTGCTGAAATTAGTTCAACATTCCATGTGCCTTGGCATGCAAAATTCTCTGGTCCGCTTGTCATACAGACTACCCCGTCATCTTTCATGTGCTGACTGGAATAGTCAAAAGTGGGTTGATTCAATCCAGATGTCTTCTGGTACCCTTGAATCTGTTCAGTCATACATTCCATATGCTGTAGTTGAAAGTTCTTTTTTAACTGGGTTGAATCCACTTGAATGTTTTGTTCATTCAGTGACAAATCGTGATAGCTCTTTCAGTGACCATGCGGACCTTCCTGGTACACTGACACGTAGACTTATGTTCTTCATGCGTGATTTGTATGATGCATATGATGGAACGGTGAGAAATTTATATGGTAATCAACTTATTCAGTTTTCTTATGATATTGAAGAGGACTCTTCATGCAATAAAGGTTTCCAGCAGTATGCTTTAGGTGGTGAATCAGTTGGGGCAATTTCTGCCTGTGCAATTTCTGAAGCTGCATACAGTGCTTTGGGTCAACCAGTTAGTCTACTCGAAACATCACCTTTGCTGAATTTGAAAAATGTTCTGGAGTGTGGTTCAAGGAAAAGAAATGGTGATCAGACTGTGTCTTTATTTTTGTCTGAAAAGCTTGGTAAACAGAGACATGGGTTTGAATATGCAGCTTTAGAAGTCAAGAATTATTTGGAAAGATTGTTGTTCTCAAACATTGTTTCTAAAGTGATGATAATATTCACCCCACATGACAGCAGGAGCCAAGAAAAATACAGTCCTTGGGTCTGCCACTTTCATTTAGACAAGGAAATTGTAACAAGAAGAAAATTGAAAGTGCATTCTATCATTGACTCTCTCTATCAGAGATATTACTCTCAGAGAAAAGACTCAAAAGTCTGTTTTACCAATTTGAAAATTTCAAGCAGGAAGTGTTCTGCTGATTCCATGGTTAAGGAAGGTGAAGACACTTCTATAGATAAAGAAGAGGGTGATGATTGCATCATGGTCACAATTGTTGAAAACTCTAAGAATCCTATACAACTGGATTCTGTTCGGGACTTGGTGATACCTTTTCTTCTAGGAACAGCAATACAAGGATTTCTGGACGTCAAGAAGGTTGATATTCTCTGGAATAATCAGTCAAAAGTAACAAATTCTCGTAATGGTTTTTCTGGTGAACTGTACTTGAGGGTAACTTTGTCCAGCGAGGGTAGCAGAGGAAGATTTTGGGGTGTCCTCCTAAAGCTTTGTCACAAGATAATGCATATAATTGACTGGACACGAAGTCATCCAGATAACATCAATCATTTCTCATCAGCATATGGAATTGATGCAGGGTGGCAATACTTTTTCAATAGTTTGGCATGTGCAACATCTGATACCGGCAAGTCCATCCTTCCTAAGCATTTGTGTCTTGTTGCCAATAGTCTGTCATGTAGTGGAGAGTTTGTAGGATTAAATGCTAAAGGCATGGCACTACAAAGAAAACATGCGTCCGTTTCATCACCATTTGTGCAAGCATGCTTTGCGAATCCAGGTAGTTGCTTTATAAAAGCTGCTAAGTCTGGAGCCACGGATAATCTCCAGGGCAGCCTGGATGGGTTGGCTTGGGGAAACTGTCTATCTATGGGGACAAGTGGAATGTTTGATGTCATATATTCAGAGAAGGTAGCTAAGTCTGTAGATGTGTATGAGCTGCTTGAAGCCAGTTTTGACAAGCCGAACAATAAAATTGGTACTCATTTGCACAAATATTCATCTGACAAATGCGGTTCTGAGTTTAGGCATAAAAATGGTTATGCCTTGAAAGAGGGAAAACAGTGGAAAACCATTTTAAGAAATTTTGTGACAGTAAATGATATTCAGAAGCTGACTTTTGCATCGAGGTGCATATTGAACAAGTATTCAATTGATGAGCTGCTAAGTGAGAGTGACAGGTCAACAATGCTAAGGGTTTTGAATTTTCATCCTCATAAAAGTGAGAAGTTTGGCATTGGACCACAGGACATTAAGGTTGGATGGCATCCAAAATACAAGGATAGCCGGTGCTTCCATATAATAAGAACTGATGGGACGGTTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCTCTTGATATCGTTGATCCAAAAAAATCAAAGATCCAGGAGAAAAAATGGTCAGGACATGGTGACACGTAA 4365 0.3869 MDDDLLQRNKTPSVVIKAIKFDVLTEEDIENISVLEINAAGQVTGSNLGLPNASDECATCGTKDKKFCEGHFGVIKFPTPILHPYFMSEIAHILNKICPVCKSIRHKSKGARLIYGTKRSNDCNYCSVYPSMQFRVSSNDLFRRTAIIVEVKASKKTLGTEIPADFWNFIPCDAQQEENYVNRRVLSPVQVNYLLNDVDPDFIEKYIPRKNLLCLNCFPVTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDFRGTANELSSRVLDCLRISKLNPDKTPNSIFADIQQRKIGENAFNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELSEIGIPCHIAESLQVSEYVNRQNREKLLYCCELHLLEKGKINVCRKGSIVHLYKKEDLQIGDKFYRPLADGDKVLINRPPSIHQHSMISLTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLSISNKRLIPPAVVKAPSSNSSLWNGKQLFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLYAAQKVLCEWLSMTGFSVSLSDLYLSSDSYARENMIEEIFYGLKDAERACNFKQLLLDYYCDFLSGSLQESENAITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGNQLIQFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAAYSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSKVMIIFTPHDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKDSKVCFTNLKISSRKCSADSMVKEGEDTSIDKEEGDDCIMVTIVENSKNPIQLDSVRDLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGVLLKLCHKIMHIIDWTRSHPDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKVAKSVDVYELLEASFDKPNNKIGTHLHKYSSDKCGSEFRHKNGYALKEGKQWKTILRNFVTVNDIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKSEKFGIGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCILGALDIVDPKKSKIQEKKWSGHGDT* 1455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1834 1454 Gene3D RNA polymerase ii 345 397 - -
Gso1g1834 1454 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 11 1282 - -
Gso1g1834 1454 Pfam Protein of unknown function (DUF3223) 1358 1429 - -
Gso1g1834 1454 Pfam RNA polymerase Rpb1, domain 4 689 751 IPR007083 GO:0003677|GO:0003899|GO:0006351
Gso1g1834 1454 Gene3D RNA polymerase II, clamp domain 6 115 IPR044893 -
Gso1g1834 1454 CDD RNAP_IV_RPD1_N 24 850 IPR040403 -
Gso1g1834 1454 SMART rpolaneu7 211 499 IPR006592 GO:0003677|GO:0003899|GO:0006351
Gso1g1834 1454 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 2 1347 - -
Gso1g1834 1454 PANTHER DNA-DIRECTED RNA POLYMERASE 2 1347 IPR045867 GO:0003899|GO:0006351
Gso1g1834 1454 Pfam RNA polymerase Rpb1, domain 2 312 469 IPR000722 GO:0003677|GO:0003899|GO:0006351
Gso1g1834 1454 Gene3D RNA polymerase Rpb1, domain 3 479 627 IPR042102 -
Gso1g1834 1454 Gene3D - 307 478 - -
Gso1g1834 1454 Pfam RNA polymerase Rpb1, domain 3 475 625 IPR007066 GO:0003677|GO:0003899|GO:0006351
Gso1g1834 1454 Gene3D - 1340 1431 - -
Gso1g1834 1454 Pfam RNA polymerase Rpb1, domain 1 16 247 IPR007080 GO:0003677|GO:0003899|GO:0006351
Gso1g1834 1454 Gene3D - 664 803 IPR038120 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1834 Gso-Chr1 55104341 55118390 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1834 K16250 - gmx:100810483 2916.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1834 1 55104341 55118390 Gso1g1834 1 55104341 55118390 ECH