Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1831 ATGGAAAAGAATGTGGGGATTCTCGCCATTGACATCTACTTCCCTCCCGCTTGCGTTCAGCAGGAAGCATTGGAGACTCATGATGGTGCCAGTAAAGGGAAGTATACCATTGGACTTGGCCAAGACTGCATGTCATTCTGTACCGAAGTAGAAGATGTCATCTCAATGAGTTTGACAGTGGTTACTTCTCTTCTTGAGAAGTATGGGATTGATCCTAAACAAATCGGTCGTCTGGAAGTTGGAAGCGAGACCGTGATAGACAAAAGCAAATCCATCAAGACATTCCTGATGCAGATCTTCGAGAAATATGGAAATACTGACATTGAGGGTGTTGATTCAACTAATGCATGCTATGGAGGAACTGCTGCTCTGTTTAATTGTGTCAATTGGGTGGAGAGCAATTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCAGTCTATGCTGAAGGACCTGCCCGACCTACTGGAGGAGCTGCTGCTATTGCCATGCTAATTGGTCCTGATGCTCCCATTTCTTTTGAAAGCAAATTGAGAGGAAGTCATATGTCTCATGTTTACGATTTTTACAAACCTAATCTTGCCAGTGAATATCCAGTTGTTGATGGAAAGCTTTCACAAACTTGTTACCTCATGGCTGTTGATTCTTGCTATAAGAATTTCTGTCACAAGTTTCAGAAATTCCAGGGAAAACAATTTTCTCTTTTTGATGCTGAATACTTTGTATTTCACTCTCCTTATAACAAGCTTGTACAGAAGAGTTTTGCTCGGTTGTTTTTCAATGACTTCTTGATGAATTCCAGCTCTGCGGATGAGGTTGCCAAAGAAAAACTGGGACCTTTTGCAACTTTATCTGGTGATGAGAGCTACCAAAGTCGGGATCTTGAAAAGGCATCCCAGCTACTTGCAAAGCCTCTATATGATCAGAAGGTACAACCAACTACTTTGATTCCAAAGCAAGTTGGAAACATGTACACTGCGTCTCTTTATGCAGCATTTGCCTCCCTCATTCACAACAAACATAGCACATTGGCAGGTAAGAGGGTGATATTATTCTCATACGGAAGTGGCTTAACTGCCACAATGTTTTCTTTGCAATTACGAGACAGTCAACATCCGTTTAGCTTGTCAAACATGGCTAGAGTGATGAATGTCGATGGAAAATTGAAGTCAAGACATGAGTTTCCCCCGGAGGAGTTTGTTGAAAACTTGAAGTTAATGGAGCATAGATATGGTGCGAAGGAATTTGTGACAAGCAAGGACAGTAGCCTTTTATCTCCGGGCACATTCTATCTCACTGAAGTTGACTCCATGTATCGGAGATTCTATTCAAAGAAAACTAAAGAAAGCAGTTTGACTCACGCTGAGAACGGTGTGATTGCTAATGGCGTTGCTAATGGCCACTGA 1416 0.4223 MEKNVGILAIDIYFPPACVQQEALETHDGASKGKYTIGLGQDCMSFCTEVEDVISMSLTVVTSLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPISFESKLRGSHMSHVYDFYKPNLASEYPVVDGKLSQTCYLMAVDSCYKNFCHKFQKFQGKQFSLFDAEYFVFHSPYNKLVQKSFARLFFNDFLMNSSSADEVAKEKLGPFATLSGDESYQSRDLEKASQLLAKPLYDQKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGKRVILFSYGSGLTATMFSLQLRDSQHPFSLSNMARVMNVDGKLKSRHEFPPEEFVENLKLMEHRYGAKEFVTSKDSSLLSPGTFYLTEVDSMYRRFYSKKTKESSLTHAENGVIANGVANGH* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1831 471 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 2 449 - -
Gso1g1831 471 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Gso1g1831 471 CDD init_cond_enzymes 4 368 - -
Gso1g1831 471 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 3 174 IPR013528 -
Gso1g1831 471 SUPERFAMILY Thiolase-like 176 447 IPR016039 GO:0016746
Gso1g1831 471 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Gso1g1831 471 Gene3D - 1 451 IPR016039 GO:0016746
Gso1g1831 471 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Gso1g1831 471 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1831 Gso-Chr1 55084910 55090269 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1831 K01641 - gmx:100788028 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1831 1 55084910 55090269 Gso1g1831 1 55084910 55090269 ECH