Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1825 ATGGACGAATCATTCACTCCAGCACCACCACCTCCTCCAATGTCCTTTTCTCGGCACGATCACGTCCAACGAATGATAAACTCGAAGCGCTACAAGTCACCTTCGAAAACAATATACTCCGACAGGTTCATTCCGAGCAGATCCGGTTCCAATTTCGATCTCTTCAATCTACCTTCGCCGTCGTCGTCAGAGGACAGTTGCAGTTGCAGCCCCTACAGCACCGCGCTGCGGAAGGCCTTGTTCGGACCAGACACTCCCGATAAATTTGAAAGCCCTAATATATTCCGTTACAAAACGGAGACTCGAAAGTCTATGTATTCTCTCTCACCCACCCCTTTTACTTCCCAGGATGATCTTCTCCCTGGTTATGACAACAATCATAAACCTCCCAAGCGTCCTCGCAAGATTCCTCCCTCCTCTTTTAAGGTTTTGGACGCCCCTGCGCTGCAAGACGATTTTTATCTGAATCTCGTGGATTGGTCATCCAACAATATCTTGGCTGTGGCTCTGGAGAACTCTGTTTATTTGTGGAATGCTTCTAGCAGCAAGGTAACTAAATTATGCGATTTGGGGATTGATGATTCAGTTTGTTCAGTTGGCTGGGCTCCACTTGGTACCTACCTGTCTGTTGGATCAAACAGTGGTAAAGTCCAGATTTGGGATGTATCTCAAGGCAAGTCAATAAGAACTATGGAGGGTCATCGTTTACGTGTTGGGGCCTTGGCTTGGAGTTCCTCTCTTTTGTCTTCTGGTGGCCGGGATAAAAGCATTTATCAACGAGATATACGTGCGCAGGAGGATTTTGTCAGTAAACTGTCTGGGCACAAGTCAGAGGTTTGTGGACTGAAGTGGTCTTATGACAACCGTGAGCTAGCATCTGGAGGAAATGACAACAGGTTGCTTGTTTGGAATCAAAAGTCAACCCAGCCCGTTCTGAAGTTCTGTGAGCATACAGCAGCTGTTAAAGCTATTGCATGGTCTCCTCATGTAAATGGACTTCTTGCATCTGGAGGAGGAACTGTGGACCGAAACATTCGCTTTTGGAATACAACCACAAACTCACAGTTAAACTGTATCGACACTGGTAGTCAGGTTTGTAACCTTGTTTGGTCTAAAAATGTGAATGAACTCGTAAGCACACATGGTTACTCCCAGAACCAGATAATAGTTTGGAAATATCCCACCATGTCAAAGCTAGCAACACTTACAGGCCATACTTACAGAGTTCTTTATCTTGCCATATCTCCTGACGGGCAGACTATCGTCACTGGAGCTGGAGATGAAACTCTTAGGTTCTGGAATGTATTCCCTTCGCGGAAATCACAGAATACTGAGAGTGAAATTGGAGCTTCATCTTTTGGCAGAACTATCATCAGATGA 1380 0.4565 MDESFTPAPPPPPMSFSRHDHVQRMINSKRYKSPSKTIYSDRFIPSRSGSNFDLFNLPSPSSSEDSCSCSPYSTALRKALFGPDTPDKFESPNIFRYKTETRKSMYSLSPTPFTSQDDLLPGYDNNHKPPKRPRKIPPSSFKVLDAPALQDDFYLNLVDWSSNNILAVALENSVYLWNASSSKVTKLCDLGIDDSVCSVGWAPLGTYLSVGSNSGKVQIWDVSQGKSIRTMEGHRLRVGALAWSSSLLSSGGRDKSIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLLVWNQKSTQPVLKFCEHTAAVKAIAWSPHVNGLLASGGGTVDRNIRFWNTTTNSQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWKYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSRKSQNTESEIGASSFGRTIIR* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1825 459 SMART WD40_4 352 392 IPR001680 GO:0005515
Gso1g1825 459 SMART WD40_4 395 434 IPR001680 GO:0005515
Gso1g1825 459 SMART WD40_4 224 261 IPR001680 GO:0005515
Gso1g1825 459 SMART WD40_4 307 349 IPR001680 GO:0005515
Gso1g1825 459 SMART WD40_4 265 304 IPR001680 GO:0005515
Gso1g1825 459 SMART WD40_4 137 178 IPR001680 GO:0005515
Gso1g1825 459 SMART WD40_4 181 221 IPR001680 GO:0005515
Gso1g1825 459 Pfam Anaphase-promoting complex subunit 4 WD40 domain 163 245 IPR024977 -
Gso1g1825 459 SUPERFAMILY WD40 repeat-like 144 443 IPR036322 GO:0005515
Gso1g1825 459 Pfam WD domain, G-beta repeat 398 434 IPR001680 GO:0005515
Gso1g1825 459 Pfam WD domain, G-beta repeat 309 349 IPR001680 GO:0005515
Gso1g1825 459 Pfam WD domain, G-beta repeat 269 304 IPR001680 GO:0005515
Gso1g1825 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 402 435 - -
Gso1g1825 459 PANTHER PROTEIN FIZZY-RELATED 1 19 459 - -
Gso1g1825 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 443 IPR001680 GO:0005515
Gso1g1825 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 313 IPR001680 GO:0005515
Gso1g1825 459 MobiDBLite consensus disorder prediction 111 138 - -
Gso1g1825 459 ProSitePatterns Trp-Asp (WD) repeats signature. 421 435 IPR019775 -
Gso1g1825 459 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 19 459 IPR033010 GO:0010997|GO:0097027|GO:1904668
Gso1g1825 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Gso1g1825 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 304 - -
Gso1g1825 459 Gene3D - 130 438 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1825 Gso-Chr1 55028752 55034200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1825 259 435 Miscellaneous Gene Families AT5G08390 23.596 1.58e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1825 K03364 - gmx:100785726 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1825 1 55028752 55034200 Gso1g1825 1 55028752 55034200 ECH