Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1808 ATGGAGTGGCCTGCGTGTACGGACGAATACGAAAAGCTCATAATTCGGATGAACACTCCCAGGGTTGTCATTGACAATTCCGTTTTCTCCTCAGCTACGCTAGTCAAGGTTGACAGCGCCAGAAGGCATGGTATTCTATTGGATGCTGTAGAAGTGCTAGCTGACCTGAACCTTTCAATTAAGAAAGCGTATATTTCTGCTGATGGCAAGTGGTTCATGGATGTTTTTCATGTCACCGATCAAAATGGAAACAAGATAATCGACGAGAGTGTTTTAAAATATATTGAACAGTCACTTGGGAACATTCACTATGGAAGAACCAACCTCTCTAACGGTCTCACTGCGTTGGAATTAACAGGAACTGACCGAGTTGGTCTTTTATCGGAAGTGTTTGCTGTACTGGCTGATCTTCAATGTGATGTGGTTGAGTCTAAGGTTTGGACACACAATGGCCGTATTGCCTCCTTAATCTATGTAAAAGATTCTAGTTCTGGGTCTGCTATTGAGGACTCTCAGAAAATTAATAAGATTGAATTGCGCTTAAGAAATGTTTTGAAGGGAGACAATGACATTAGAAGTGCAAAAATTTCTTTCTCTATGGCCGTGATGCACACTGAAAGAAGGCTACATCAGTTGATGTTTGTTGACCGTGATTATGAAAGGGCTCCTATTCTTAAATTGACTTCCGATAACGCATCGGTGACAGTCCAGAATTGGGAAGGAAGGGGTTATTCAGTCGTGAATGTTCAGTGCAAAGATCGAACCAAGCTATTATTTGACATTGTATGCAATTTGACAGACATGGAATATGTTGTATTCCATGCAACTATTAACACTGATGGTGACCGAGCTTACTTGGAATTTTATATAAGACACAAGGATGGGACTCCAATTAGTTCAGAACCAGAACGTCAACGTGTAATTCAATGCTTAAAAGCTGCTGTAGAGAGAAGGGCATCTGAGGGTGTTCGATTAGAGTTATGCACAGAAGACAGGCAGGGGCTTCTAGCAGAAGTGGTGAGAACATTCCGAGAGAATGGGCTCAATGTGACCAGGGCTGAGATATCTACCATAGGGAATATGGCTAAAAATATATTCTATGTAACGGATGCGATTGGAAATCCAGCTGATTCCAAAATTATCGAATCTGTTAGGCAGAAAATTGGGTTAAGCAATTTAGAGGTGAAGGAGTTGCCATTGATAAATCATCAGGAGGCAGAGAGAGAGGATCAAGCGGTTGGAATGGGTGGGGCAGTGTTGTTGTCCATTGGGAGCCTTGTGAGAAGGAATCTGTACCATTTGGGACTAATCAAATCCTGTTCTTAA 1326 0.4186 MEWPACTDEYEKLIIRMNTPRVVIDNSVFSSATLVKVDSARRHGILLDAVEVLADLNLSIKKAYISADGKWFMDVFHVTDQNGNKIIDESVLKYIEQSLGNIHYGRTNLSNGLTALELTGTDRVGLLSEVFAVLADLQCDVVESKVWTHNGRIASLIYVKDSSSGSAIEDSQKINKIELRLRNVLKGDNDIRSAKISFSMAVMHTERRLHQLMFVDRDYERAPILKLTSDNASVTVQNWEGRGYSVVNVQCKDRTKLLFDIVCNLTDMEYVVFHATINTDGDRAYLEFYIRHKDGTPISSEPERQRVIQCLKAAVERRASEGVRLELCTEDRQGLLAEVVRTFRENGLNVTRAEISTIGNMAKNIFYVTDAIGNPADSKIIESVRQKIGLSNLEVKELPLINHQEAEREDQAVGMGGAVLLSIGSLVRRNLYHLGLIKSCS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1808 441 ProSiteProfiles ACT domain profile. 34 110 IPR002912 -
Gso1g1808 441 CDD ACT_ACR_1 32 100 - -
Gso1g1808 441 SUPERFAMILY ACT-like 244 312 IPR045865 -
Gso1g1808 441 SUPERFAMILY ACT-like 111 172 IPR045865 -
Gso1g1808 441 ProSiteProfiles ACT domain profile. 324 403 IPR002912 -
Gso1g1808 441 Pfam ACT domain 325 384 IPR002912 -
Gso1g1808 441 Gene3D - 323 408 - -
Gso1g1808 441 PANTHER [PROTEIN-PII] URIDYLYLTRANSFERASE-RELATED 1 439 - -
Gso1g1808 441 CDD ACT_ACR_3 244 318 - -
Gso1g1808 441 Pfam ACT domain 118 162 - -
Gso1g1808 441 SUPERFAMILY ACT-like 320 394 IPR045865 -
Gso1g1808 441 CDD ACT_ACR_4 322 393 - -
Gso1g1808 441 ProSiteProfiles ACT domain profile. 115 199 IPR002912 -
Gso1g1808 441 SUPERFAMILY ACT-like 30 97 IPR045865 -
Gso1g1808 441 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 1 439 IPR040217 -
Gso1g1808 441 Gene3D - 113 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1808 Gso-Chr1 54894544 54897853 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1808 - - gmx:100780903 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1808 1 54894544 54897853 Gso1g1808 1 54894544 54897853 ECH