Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1799 ATGGGTAAGGATCTGAGCGAGGAACAAGTGTCTTCCATGAAGGAAGCCTTCTCTCTATTCGACACTGACGGAGACGGTCGGATCGCTCCGTCGGAGCTGGGGATCCTGATGAGGTCTCTGGGAGGTAACCCGACGCAGGCCCAACTCAAAGCCATCGTGGCTGAAGAGAACCTCACGGCCCCCTTCGACTTCCCCCGATTCCTCGATCTAATGGCCAAACACATTAAACCCGAACCCTTCGATCGCCAACTCCGCGACGCCTTCAAGGTCCTCGACAAGGACTCCACCGGCTTCGTCGCCGTCTCCGAGCTCCGCCACATCCTCACCAACATCGGCGAGAAGCTCGAGCCCTCCGAGTTCGACGAGTGGATCCGTGAAGTCGACGTCGGATCCGACGGCAAGATCCGCTACGAGGATTTCATCGCCAGAATGGTCGCCAAGTAA 444 0.5811 MGKDLSEEQVSSMKEAFSLFDTDGDGRIAPSELGILMRSLGGNPTQAQLKAIVAEENLTAPFDFPRFLDLMAKHIKPEPFDRQLRDAFKVLDKDSTGFVAVSELRHILTNIGEKLEPSEFDEWIREVDVGSDGKIRYEDFIARMVAK* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1799 147 SUPERFAMILY EF-hand 5 144 IPR011992 -
Gso1g1799 147 CDD EFh 14 55 IPR002048 GO:0005509
Gso1g1799 147 Gene3D - 81 145 - -
Gso1g1799 147 Pfam EF-hand domain 13 41 IPR002048 GO:0005509
Gso1g1799 147 ProSiteProfiles EF-hand calcium-binding domain profile. 115 147 IPR002048 GO:0005509
Gso1g1799 147 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
Gso1g1799 147 PANTHER - 1 147 - -
Gso1g1799 147 PANTHER CALCIUM BINDING PROTEIN 1 147 - -
Gso1g1799 147 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Gso1g1799 147 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Gso1g1799 147 CDD EFh 83 144 IPR002048 GO:0005509
Gso1g1799 147 SMART efh_1 83 111 IPR002048 GO:0005509
Gso1g1799 147 SMART efh_1 12 40 IPR002048 GO:0005509
Gso1g1799 147 SMART efh_1 119 147 IPR002048 GO:0005509
Gso1g1799 147 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Gso1g1799 147 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Gso1g1799 147 Gene3D - 3 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1799 Gso-Chr1 54825871 54826863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1799 1 147 EF-hand Containing Proteins AT1G12310 86.486 7.97e-93 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1799 K13448 - gmx:100500081 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1799 1 54825871 54826863 Gso1g1799 1 54825871 54826863 ECH