Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1795 ATGGGAAGCCCCAACACAAGAACCAGCTCCTCGTCTGATTCCGAACTCCCTTGCTCTAATTACATTCCGGTACCCGATGGACCCCACTCTCCCGCAGAACCAGCTCGAAGAGAGGTGATTGTAATCTTTTGTGGGTTGCTGGTGCTTGTGTCCTTGGTGGCTTTCAATGGTTACAGCTGGGCGCATTCAAATGGACATGATGGAGATCATCATCATGCGTCATCATCATTGCCAACAACGTTGTTAACAGTAACACCCAATGAATTGGAACTGAGCCCCGACACAGTGCCATGGTCAACATGGCAGACGACGCTTTCACGTGGCGTGTCTGCAGGGGTCTCGGAGAAGTCCAGCTGGCTATTCAACAGCAACAATGGGAACGGGGAATCGTATCCTTGGAACAATAGCATGCTGTCATGGCAGAGAACAGCTTACCATTTCCAACCTGAGAAGAATTGGATGAACGATCCTAATGGTCCAATGTACTACAAAGGGTGGTATCACTTCTTCTACCAGTACAATCCAAACGGTGCAGTTTGGGGTGACATAGTTTGGGGACACGCTGTGTCAAGGGACATGATTCACTGGTTTCACCTTCCACTTGCAATGGTGGCTGATCAATGGTATGACAAAAACGGTGTGTGGACAGGCTCTGCCACCATCTTACCCGATGGTCAAGTCATCATGCTATACACTGGTTCCACCAACGAGTCAATGCAAGTGCAAAACCTTGCATACCCTGCAGACCCCTCTGATCCCCTCCTTGTTGATTGGATCAAATACCCTGCAAATCCTGTTCTATTCCCACCACCTGGCATTGATGCCAAAGATTTTCGTGACCCCACCACTGCATGGATCACCTCTGAAGGAAAGTGGCGCATCAGTATTGGTTCCAAGCTTAACAAAACTGGCATTGCCTTGGTTTATGATACCAATGACTTCAAGACCTTTGAGCGTGTGGAGGGAGTGCTTCATGCTGTCCCTGGCACTGGCATGTGGGAGTGTGTTGACTTTTTCCCTGTATCTAGCAAGGGTGAAAATGGCCTTGATACTTCAATCAATGGGGAGAATGTGAAGCATGTGGTAAAGGTTAGCTTGGATGATGATAGACATGATTACTATGCACTCGGGACTTACGATGAGAAGAATGTTAAGTTCACACCTGATGACTTCAAGAACGATGTTGGTATTGGACTCAGATATGACTATGGTATATTTTATGCATCCAAGACATTTTATGATCAGAGTAAGGGGAGGAGAGTGTTGTGGGGTTGGATTGGAGAGTCTGATAGCGAATACGCTGACGTGGCCAAAGGTTGGGCATCAGTTCAGGGTATTCCAAGAACAGTGGCACTTGATAAGAAAACTGGTAGCAACTTAATTCAATGGCCTGTGGCAGAGGTAGAGAGTTTGAGATTGAGAAGCGACGAGTTTCAAAATTTGAAGGTGAAGCCAGGGTCAGTGGTGCCACTAGAAATTGGAACAGCTGCACAGTTGGACATTGTAGCTGAGTTTGAGATAGATAAGAAGGCCTTGGAGAAGACAGGCCAGTCCAATAAAGAGTATAAGTGTAGCACTAGTGGTGGATCAACTGAGCGTGGTACCATAGGACCTTTTGGTCTTCTAGTTTTGGCAGATGATGATCTTTCTGAATACACTCCCACTTACTTTTATGTCGTCAAAGGAAGCCATGGACAACTTAAAACTTCCTTCTGCTCTGATCAATCAAGGTCTTCTCTAGCAACTGATGTTAGTAAGAAAATCTTTGGAAGCTTTGTTCCAGTACTAAAAGACGAAAAGTTGTCCGTAAGGATATTGGTGGACCATTCTATAGTGGAAAGCTTTGCTCAAGGTGGAAGGACGTGTGTAACATCTCGAGTTTATCCAACGAAGGCAATCTATGGAGCTGCTAGATTGTTTTTATTCAATAATGCTACTGAGGCCACTGTGACTGCTTCAGTTAAGGTTTGGCAAATGAATTCTGCATTCATACGCCCATTCCACCCTGACCAAAGCAATTCATTTTAA 2028 0.4566 MGSPNTRTSSSSDSELPCSNYIPVPDGPHSPAEPARREVIVIFCGLLVLVSLVAFNGYSWAHSNGHDGDHHHASSSLPTTLLTVTPNELELSPDTVPWSTWQTTLSRGVSAGVSEKSSWLFNSNNGNGESYPWNNSMLSWQRTAYHFQPEKNWMNDPNGPMYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIHWFHLPLAMVADQWYDKNGVWTGSATILPDGQVIMLYTGSTNESMQVQNLAYPADPSDPLLVDWIKYPANPVLFPPPGIDAKDFRDPTTAWITSEGKWRISIGSKLNKTGIALVYDTNDFKTFERVEGVLHAVPGTGMWECVDFFPVSSKGENGLDTSINGENVKHVVKVSLDDDRHDYYALGTYDEKNVKFTPDDFKNDVGIGLRYDYGIFYASKTFYDQSKGRRVLWGWIGESDSEYADVAKGWASVQGIPRTVALDKKTGSNLIQWPVAEVESLRLRSDEFQNLKVKPGSVVPLEIGTAAQLDIVAEFEIDKKALEKTGQSNKEYKCSTSGGSTERGTIGPFGLLVLADDDLSEYTPTYFYVVKGSHGQLKTSFCSDQSRSSLATDVSKKIFGSFVPVLKDEKLSVRILVDHSIVESFAQGGRTCVTSRVYPTKAIYGAARLFLFNNATEATVTASVKVWQMNSAFIRPFHPDQSNSF* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1795 675 SMART glyco_32 146 619 IPR001362 GO:0004553|GO:0005975
Gso1g1795 675 MobiDBLite consensus disorder prediction 1 30 - -
Gso1g1795 675 Gene3D - 476 659 - -
Gso1g1795 675 CDD GH32_Fruct1-like 152 452 - -
Gso1g1795 675 Pfam Beta-fructofuranosidase, N-terminal domain 20 138 IPR021792 GO:0004564
Gso1g1795 675 SUPERFAMILY Concanavalin A-like lectins/glucanases 464 663 IPR013320 -
Gso1g1795 675 MobiDBLite consensus disorder prediction 1 18 - -
Gso1g1795 675 Gene3D Glycosyl hydrolase domain; family 43 150 475 IPR023296 -
Gso1g1795 675 SUPERFAMILY Arabinanase/levansucrase/invertase 139 465 IPR023296 -
Gso1g1795 675 Pfam Glycosyl hydrolases family 32 N-terminal domain 146 464 IPR013148 -
Gso1g1795 675 ProSitePatterns Glycosyl hydrolases family 32 active site. 146 159 IPR018053 GO:0004553|GO:0005975
Gso1g1795 675 Pfam Glycosyl hydrolases family 32 C terminal 467 658 IPR013189 -
Gso1g1795 675 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 32 668 - -
Gso1g1795 675 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 32 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1795 Gso-Chr1 54782897 54787763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1795 1 667 Glycoside Hydrolase AT1G12240 62.206 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1795 K01193 - gmx:100798772 1360.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1795 1 54782897 54787763 Gso1g1795 1 54782897 54787763 ECH