Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1790 ATGGCAATGCACAAGAGCAGTTCAGGTTCAGCATTGGGTCCGGGAGGCTTGGACTTAACTCAAGCCTTCTTCAAGTCGATCATGAACGCTGCAGCTTCTTCTCCCACCAAACGCCACAACAAAATCTCTGTTGTTGGGGCAGGCAACGTGGGAATGGCCATAGCCCAAACCATCCTCACTCAGGATCTCACCGACGAGCTTGTGCTCGTGGATGCAATTCCTGACAAACTCCGCGGCGAGATGCTTGACCTCCAGCACGCCGCTGCCTTCCTCCCCCGCACCAGAATTCAGGCCTCCACCGATTACTCGGTCACGCTGGGCTCTGACCTCTGCATTGTCACAGCCGGGGCTCGTCAAATTAATGGCGAGTCCCGGCTCAATCTCCTACAGAGGAATGTCACACTCTTTCAGAAAATCATACCTCCTTTGGCTCGTTACTCCCCAGACACCATTCTTCTCATCGTTTCAAATCCCGTGGACGTGCTCACTTACGTGGCATGGAAGCTTTCAGGGTTCCCTTCAAACCGCGTCATTGGCTCCGGCACTAACTTGGACTCTTCCCGTTTTCGTTTCCTCATTGCTGATCATCTTGATGTCAACGCTCAAGATGTCCAGGCTTTTATAGTGGGGGAACATGGTGACAGCTCAGTGGCTCTGTGGTCTAGTATTAGTGTTGGGGGTGTTCCGGTGCTGAGTTTTTTGGAGAAGCAAGAAATTGCGTATGAGAAGGAAATGTTGGAGAACATACACAAGGAAGTTATACAGGGTGCTTATGAAGTTATCAATCTGAAAGGGTACACTTCTTGGGCGATAGGATACTCGGTGGCAAACTTGGCACGAACCATTCTCAGGGACCAAAGGAGGGTCCACCCTGTCTCGGTTCTTGCAAAGGGTTTTTATGGCATTGATGATGGGGAAGTGTTTCTTAGCTTGCCTGCACAACTAGGAAGAGGAGGGGTTTTGGGTGTAACCAATGTGCACTTGACTGAAGAAGAGACACAGAGGCTTAGGGACTCAGCTAAGACAATCCTCCAAGTGCAGAATCAGTTGGTTATTTGA 1059 0.5033 MAMHKSSSGSALGPGGLDLTQAFFKSIMNAAASSPTKRHNKISVVGAGNVGMAIAQTILTQDLTDELVLVDAIPDKLRGEMLDLQHAAAFLPRTRIQASTDYSVTLGSDLCIVTAGARQINGESRLNLLQRNVTLFQKIIPPLARYSPDTILLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAFIVGEHGDSSVALWSSISVGGVPVLSFLEKQEIAYEKEMLENIHKEVIQGAYEVINLKGYTSWAIGYSVANLARTILRDQRRVHPVSVLAKGFYGIDDGEVFLSLPAQLGRGGVLGVTNVHLTEEETQRLRDSAKTILQVQNQLVI* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1790 352 Gene3D - 22 181 - -
Gso1g1790 352 PANTHER L-LACTATE DEHYDROGENASE 3 352 - -
Gso1g1790 352 PIRSF Lac_mal_DH 36 352 IPR001557 GO:0016616|GO:0019752
Gso1g1790 352 Hamap L-lactate dehydrogenase [ldh]. 39 351 IPR011304 GO:0004459|GO:0005737
Gso1g1790 352 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 182 346 IPR022383 GO:0016616
Gso1g1790 352 SUPERFAMILY LDH C-terminal domain-like 180 350 IPR015955 GO:0003824|GO:0016616
Gso1g1790 352 CDD LDH_1 37 349 - -
Gso1g1790 352 Gene3D - 182 350 IPR015955 GO:0003824|GO:0016616
Gso1g1790 352 Pfam lactate/malate dehydrogenase, NAD binding domain 41 179 IPR001236 GO:0016491
Gso1g1790 352 TIGRFAM L-LDH-NAD: L-lactate dehydrogenase 44 343 IPR011304 GO:0004459|GO:0005737
Gso1g1790 352 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 3 352 - -
Gso1g1790 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 25 179 IPR036291 -
Gso1g1790 352 ProSitePatterns L-lactate dehydrogenase active site. 209 215 IPR018177 GO:0004459
Gso1g1790 352 PRINTS L-lactate dehydrogenase signature 41 65 IPR001557 GO:0016616|GO:0019752
Gso1g1790 352 PRINTS L-lactate dehydrogenase signature 66 90 IPR001557 GO:0016616|GO:0019752
Gso1g1790 352 PRINTS L-lactate dehydrogenase signature 153 173 IPR001557 GO:0016616|GO:0019752
Gso1g1790 352 PRINTS L-lactate dehydrogenase signature 177 195 IPR001557 GO:0016616|GO:0019752
Gso1g1790 352 PRINTS L-lactate dehydrogenase signature 207 220 IPR001557 GO:0016616|GO:0019752
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1790 Gso-Chr1 54693674 54695414 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1790 K00016 - gmx:100818856 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1790 1 54693674 54695414 Gso1g1790 1 54693674 54695414 ECH