Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1786 ATGGCGGAGCCAGGAGACAGGGACGTGATTATAGGAAGAGGTGATGGAGAAGAAGAGTCATGTTCTGGTTTTCAGGGATTGAGGTTTGATATTGGTGGTGGTAGTAGTAGTAGTAGTGGTAAAAGTAGAACCAAAAGTTTTCATCCTCCTATTGAAACGCACTGGGATCTGAATTCAGCAGCAGGGAAAAAGACTTCGTCCCCTATCAAATCATTATTGTCTTACCCGCTCATGAAATTTAGGAAGACTAAAAGCCTTATAATGATTCTAGAAGGAGCTCGTGATCCTAAGGATAAACAAATTGTTGAGTCTTTTCGCCAAATGCTTTTACGAGAAGGTCTCTTGCCACCCAAACACGATGATTATCATACTCTTCTAAGGTTTCTGCGCATGAGGGATTTCGACATGTTAAAATCCAAAGAGATGTTTCAAAACTATCTCAAATGGCGCAAGGATTTTCGAGTGGACGTGCTTTCAAAGGAATTCAATTTCACGGAGTACGATGAAGTGAAGAAATGCTATCCTCATGGATACCACGGAGTTGATAGATACGGCAGACCCGTGTATATTGAGAGAATTGGGATGGTAGACCTTAACAAACTGGGGCAAGTAACCACATTTGAAAGGTTTATCAAACATCATGTGTCAGAGCAAGAAAAAACTCTCAAAGTAAGATTCCCTGCATGTTCACTAGCTGCTAAAAGGCACATAGCATCCACTACAAGTATCTTGGATGTCAACGGAGTAGGAATATCTAATTTCTCAAAGCCTGCAAGATACCTCTTTATGGAAATTCAGAAAATCGATAGCTGTTACTATCCTGAGACTCTAAATCAGCTCTTTATTATTAATGCCGGATCTGGGTTTAGGATGCTGTGGAAAGCAGTAAAGACATTCCTAGATGTACGCACAGTGGCAAAAATTCATGTGTTAGGTTTCAATTATCTCAGTGTCCTGCTTGAGGCTATTGATTCAAGTAATTTGCCAACTTTTCTGGGTGGTAATTGCACATGTTCTGATTATGGAGGTTGTCTGATGAGTGATCGAGGGCCCTGGAAAAATCCAGAAGTGTTAGAAATGATTCAGGTTGTTAATTTGAGAGAAGAGATTGATGGTAAAAGCGAAGATGGTGATGTGGATATAGAAGATTCCTCGATGCCCAAAAAGGTTGATATGCAAAACAAAGATGGCAATTCTCTCAGTCTACTTGAGGAAGCAGCATGTGCGGGATCTGACTCGGCATGTTCTTGTAGATTAGCATTGCAAAAAATTGATTGCCTTGAAGCTAGTCTTGGAGACATCAAGAATAAAATCAAGACACTGGAAGATGTACTTCAGGACACCAAGATGGCCTTGATAGAACATGCACAACATGAGGAACGACCAAAAATGTAA 1395 0.405 MAEPGDRDVIIGRGDGEEESCSGFQGLRFDIGGGSSSSSGKSRTKSFHPPIETHWDLNSAAGKKTSSPIKSLLSYPLMKFRKTKSLIMILEGARDPKDKQIVESFRQMLLREGLLPPKHDDYHTLLRFLRMRDFDMLKSKEMFQNYLKWRKDFRVDVLSKEFNFTEYDEVKKCYPHGYHGVDRYGRPVYIERIGMVDLNKLGQVTTFERFIKHHVSEQEKTLKVRFPACSLAAKRHIASTTSILDVNGVGISNFSKPARYLFMEIQKIDSCYYPETLNQLFIINAGSGFRMLWKAVKTFLDVRTVAKIHVLGFNYLSVLLEAIDSSNLPTFLGGNCTCSDYGGCLMSDRGPWKNPEVLEMIQVVNLREEIDGKSEDGDVDIEDSSMPKKVDMQNKDGNSLSLLEEAACAGSDSACSCRLALQKIDCLEASLGDIKNKIKTLEDVLQDTKMALIEHAQHEERPKM* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1786 464 CDD SEC14 167 335 IPR001251 -
Gso1g1786 464 Gene3D - 84 153 - -
Gso1g1786 464 MobiDBLite consensus disorder prediction 374 390 - -
Gso1g1786 464 PRINTS Cellular retinaldehyde-binding protein signature 124 146 - -
Gso1g1786 464 PRINTS Cellular retinaldehyde-binding protein signature 293 312 - -
Gso1g1786 464 PRINTS Cellular retinaldehyde-binding protein signature 326 335 - -
Gso1g1786 464 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 39 461 - -
Gso1g1786 464 Gene3D - 155 365 IPR036865 -
Gso1g1786 464 MobiDBLite consensus disorder prediction 1 15 - -
Gso1g1786 464 SUPERFAMILY CRAL/TRIO domain 166 361 IPR036865 -
Gso1g1786 464 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 166 340 IPR001251 -
Gso1g1786 464 SMART sec14_4 166 337 IPR001251 -
Gso1g1786 464 SMART CRAL_TRIO_N_2 121 146 IPR011074 -
Gso1g1786 464 Pfam CRAL/TRIO domain 174 334 IPR001251 -
Gso1g1786 464 Coils Coil 424 444 - -
Gso1g1786 464 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 39 461 - -
Gso1g1786 464 SUPERFAMILY CRAL/TRIO N-terminal domain 94 161 IPR036273 -
Gso1g1786 464 MobiDBLite consensus disorder prediction 31 46 - -
Gso1g1786 464 MobiDBLite consensus disorder prediction 1 49 - -
Gso1g1786 464 MobiDBLite consensus disorder prediction 374 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1786 Gso-Chr1 54666272 54670501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1786 99 331 Acyl Lipid Metabolism Gene Families AT5G47730 31.064 1.17e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1786 - - gmx:100797170 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1786 1 54666272 54670501 Gso1g1786 1 54666272 54670501 ECH