Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1729 ATGGACTCGCAGCAGAACAATCTATTCGAGACCGCTTCGCAACCCGACACCGGCAACGACGCCTACACCTTCCTTGAATTCAACACGCAGGGCGAGGATTTCGACTACCCCGAGTTCCGCGACCCGATTAGGTCGCCGGTGGCCTGGCCCACGCCGTCCGATTCGCTAGCGGACCCGTTGGAGCGCGGCGGCGGAGGCGGTTCTGATCACCAGTCTGATGCCTCGCCGGTTTCCGTGGCTCCCGGGAGTGCCACGAAGGGGGGCCGGTCGGGGAGCGGCGGCGGGAACAGCAGCCAGATGGTGGATGCGCTTGCGGCGGGGATGAGCGGGTTGAATTTCGAGGACACTGGGGATGACGATAACTATGAGTATGGGAAAGGGGATTTCACCGAACACGCTTGCCGCTATTGTGGGGTTTCCAATCCCGCGTGTGTTGTGAGGTGCAATGTGCCTTCGTGTAGAAAGTGGTTCTGTAATTCTCGAGGGAACACTTCGGGATCGCATATCGTCAATCACCTGGTTCGGGCTAAACACAAGGAAGTCTGCCTACACAAAGATAGTCCGTTGGGAGAAACAATTCTCGAATGCTACAACTGTGGATGTCGTAATGTGTTTCTCCTTGGATTTATTTCTGCAAAGACGGAAAGTGTAGTTGTTCTTCTTTGTCGTGAACCTTGCTTGAGTGTTAATGCCTTGAAGGACATGAATTGGGACCTTAGTCAATGGTGCCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTAAGGGCTCGCCAAATAAGTGCACAGCAAATAAATAAGGTGGAAGAGTTGTGGAAGACAAATCCTGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGTCCGTTGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTTATTAAGCTTGAAGCCGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATGTCACTATCCGATGGGATATTGGTCTTAATAAGAAGCGTGTTGCATACTTTGTATTTCCAAAGGAAGATAATGAGTTGCGGCTTGTACCTGGTGATGAATTACGATTGCGTTATTCTGGTGATGCTGCTCATCCTGCATGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAGGAGGTTGCACTGGAGCTTCGTGCTAGTCAGGGGGTTCCAGTTGATGTTAACCATGGTTTCAGTGTTGACTTTGTCTGGAAAAGTACAAGTTTTGATAGGATGCAGGGAGCTATGAAAACCTTTGCTGTGGATGAGACAAGTGTTAGTGGGTATATTTACCATCACTTATTGGGTCACGAAGTTGAGGTTCAAATGGTGCGTAATGCCCTGCCTCGTCGCTTTGGTGCACCCGGGCTTCCAGAGCTGAATGCATCTCAAGTTTTTGCTGTCAAGAGTGTTCTTCAAAGGCCTATTAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACCGTAACATCTGCAGCACTTGTATACCACATGGCCAAGCAAGGTCAAGGGCAGGTTTTGGTTTGTGCACCCAGTAACGTAGCTGTGGACCAGCTAGCTGAAAAGATAAGTGCTACTGGATTAAAGGTTGTGAGGCTTTGCGCAAAGTCAAGGGAAGCTGTGAGTTCTCCTGTTGAGCATTTAACTCTCCACTATCAGGTTCGACATCTTGACACATCAGACAAGAGTGAACTTCATAAGTTACAACAGCTGAAGGATGAGCAAGGCGAACTTTCTAGCAGTGATGAGAAAAAATACAAAGCACTTAAGCGAGCAACAGAAAGGGAGATTTCTCAGAGTGCTGATGTGATCTGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTTGCAAATTTTAGGTTCCGTCAGGTACTTATTGATGAGTCCACTCAAGCAACTGAACCTGAGTGCCTCATACCCTTGGTTCTTGGAGCAAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCAGTTATTATGTGCAAGAAAGCAGCCCGTGCTGGGTTAGCACAGTCACTTTTTGAACGCCTAGTTCTACTTGGTGTCAAACCAATTAGGTTGCAGGTTCAGTACCGTATGCATCCATGCCTTTCAGAATTTCCCTCAAACAGTTTCTATGAAGGCACTCTGCAAAATGGAGTCACTGTTAATGAAAGGAAGTCTTCTGGAATTGATTTTCCTTGGCCAGTGCCAAACCGTCCCATGTTTTTCTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGTGGAACATCTTATTTAAATAGGACCGAGGCTGCAAATGTTGAAAAGATTGTAACTACTTTCTTAAAAAGTGGTGTGGTACCAAGTCAGATTGGTGTGATAACACCTTATGAGGGGCAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTGCTCTCAGGCAGCAGCTTTACAAGGAGATTGAGGTTGCTAGCGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATCATTCTGTCTTGTGTTAGAAGTAATGAACATCAGGGCATTGGATTTCTGAATGATCCTAGGAGGCTCAATGTTGCTTTGACACGAGCAAGATATGGCATTGTTATTTTGGGAAACCCTAAAGTTTTGAGCAAACAGCCTCTATGGAATAGTTTATTGACTCACTACAAGGAACATGAGTGCTTAGTTGAAGGGCCTTTAAATAACTTGAAGCAAAGTATGGTTCAGTTCCAGAAACCCAAGAAGATTTACAATGAACGAAGGCTTTTTTATGGGGGTGGACCTGGAATTGCGGCTAATGATAATTTTGGTAGTGTTGGATCTGGAGCTGGCACAAGTTCAGATCGGAGGAGCAGTCGAGGAAGGGGATCTTATATACCTCCTGGTCCACCAAATGGAACTCATAAGCCTGGAGTGCATCCTGCTGGATATCCTGTGCCAAGGGTTCCTTTGCCTCCTTTTCATGGTGGTCCCCAATCTCAACCATATGCCATTCCATCTCGCGGGGCAGTTCATGGACCCGTTGGGGCAGTTCCTCATGTTCCATCTCCAGGGAGTCGAGGTTTTGGGGCTGGGAGAGGTAATTCTGGTGCTCCAATCGGCAATCATCTACCACATCAACAAGGCACCCAACAGCCTATTGGGAATATTGGATCTACATTTAACTTCCCTGCTCTAGAGAATCCCAACAGCCAGCCATCTGTTGGTGGTCCATCATCTCAACCTGGGTTTGCCAACAATATGCCTGTTCAAGGTGCTGGCCAATCATTTCGAGATCAATTTTCTATGCCTGGAATGTCCCAGGACTTCTTGGGCGATGACTTCAAAAGCCAGGGGTCTCATGTTCCTTATAATGTCACTGATTTCTCTACACAGGCTTCTCAAAGTGGATATGCTGTCGATTATGCTACACAAGGAGCACAAGGTGGATTCTCAGGGAATTTTCTTAACCAGAATTCTCAAGCTGGATATTCTCGCTTTGGTTCTGGAAATGACTTTATGTCTCAGGACTACATGGGCCATGGATCACAAGGTCTTTTCACTCAGGTGGGATTCACTGATCCCTTGCAAGATGATGCAACGCAAAGCCATTTCAGTGTGGCAAATGCCAACCCTCTTCAGTCCCAGATGAGTTCTCTTTACTCCCAACCTTTTGCTCACTACAACACACAGCCGCTTAACATGCAGGCTACCCAACAGCAGCCTCAGGCTCAGAACTCCCAAAATCAGAAAATCCACTATAACGGTTGA 3801 0.4662 MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADPLERGGGGGSDHQSDASPVSVAPGSATKGGRSGSGGGNSSQMVDALAAGMSGLNFEDTGDDDNYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERKSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGIAANDNFGSVGSGAGTSSDRRSSRGRGSYIPPGPPNGTHKPGVHPAGYPVPRVPLPPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPIGNHLPHQQGTQQPIGNIGSTFNFPALENPNSQPSVGGPSSQPGFANNMPVQGAGQSFRDQFSMPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYATQGAQGGFSGNFLNQNSQAGYSRFGSGNDFMSQDYMGHGSQGLFTQVGFTDPLQDDATQSHFSVANANPLQSQMSSLYSQPFAHYNTQPLNMQATQQQPQAQNSQNQKIHYNG* 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1729 1266 MobiDBLite consensus disorder prediction 993 1009 - -
Gso1g1729 1266 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 108 1034 - -
Gso1g1729 1266 MobiDBLite consensus disorder prediction 955 970 - -
Gso1g1729 1266 MobiDBLite consensus disorder prediction 1247 1266 - -
Gso1g1729 1266 MobiDBLite consensus disorder prediction 951 1116 - -
Gso1g1729 1266 CDD ZBD_UPF1-like 133 255 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Gso1g1729 1266 CDD 1B_UPF1-like 338 425 IPR040812 -
Gso1g1729 1266 Pfam AAA domain 582 685 IPR041677 GO:0004386
Gso1g1729 1266 Pfam Type III restriction enzyme, res subunit 488 550 IPR006935 GO:0003677|GO:0005524|GO:0016787
Gso1g1729 1266 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 491 623 IPR014001 -
Gso1g1729 1266 Gene3D - 338 426 - -
Gso1g1729 1266 CDD DEXXQc_UPF1 482 717 - -
Gso1g1729 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 941 IPR027417 -
Gso1g1729 1266 Pfam RNA helicase UPF1, 1B domain 337 426 IPR040812 -
Gso1g1729 1266 CDD SF1_C_Upf1 718 907 IPR041679 -
Gso1g1729 1266 Pfam RNA helicase (UPF2 interacting domain) 132 285 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Gso1g1729 1266 Gene3D - 446 716 IPR027417 -
Gso1g1729 1266 MobiDBLite consensus disorder prediction 1 100 - -
Gso1g1729 1266 MobiDBLite consensus disorder prediction 1 26 - -
Gso1g1729 1266 PANTHER DNA2/NAM7 HELICASE FAMILY 108 1034 IPR045055 -
Gso1g1729 1266 MobiDBLite consensus disorder prediction 1051 1113 - -
Gso1g1729 1266 Gene3D - 717 928 IPR027417 -
Gso1g1729 1266 Pfam AAA domain 695 890 IPR041679 -
Gso1g1729 1266 Gene3D - 568 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1729 Gso-Chr1 54062982 54076543 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1729 K14326 - gmx:100795594 2496.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1729 1 54062982 54076543 Gso1g1729 1 54062982 54076543 ECH
Gso1g1729 1 54062982 54076543 Gso11g0347 11 2980755 2993504 GST