Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1309 ATGAAAACATGGGTAGTTTTCCAATTACTACTAAAGCACGTTAAAAGATTGGCCAATGAAAATTTAGCCTTGTTTGGACCTAGAATATCACCATCATCCCATTCAATTTCTAAACAGAACTACCAAAATGGGAACTTCAGCGTTGTTAAGCGACACGGGCTTCCCATTACTCCATATGCTCCTGCAATGTTATCGCATTGTCATTGTTTTTGCAGCGTCATTCAGCTGTTTGACGAAATGCCACAAAGATATATACATGGGAGAGAGATCCATTTTGAGCTTGTTGATTACATCAAATTGTGCCTCAAAAAACCCAAAATTGTGACTGCCACTGTTGCCCATTGTGCAGCCTTAAAGATAGGTGCTCTAGCTCACCTCCCCACTTCAACATCTCTACTCACTATTTATTCCAAGGCTGGAGACTTTACCTCTTCAAAGGGTTTGTTTGATGAGATTCAGAATAGAGATGCGATTGCTTGGAATGCTATTGTTGCAGCATCTCTTGAAAATAAGTGTTATAGGATAGCAATGGACTTCTTTGATAAAATGATCAAGGCCCAAACTGGGTTTGATTCTACTACTCTATTGCTTATTGTATCAGCTTCCTTACACATGAAAAACTTTGATCAAGGACGCGCAATTCATTGTGTGAGTATAAAATCTGGAATGCTTGTGGATATCAGTTTAGGTAATGCTCTTGTTGACATGTATGCCAAGTGTGGTGATCTAAGCTCTTCTGAGTGCCTATATGAAGAGATTGAATGTAAAGATGCAGTTTCATGGAATTCAATTATGAGAGGCAGTCTTTACAACCGTCATCCAGAAAAAGCATTGTGTTACTTCAAAAGAATGAGTTTTTCTGAAGAAACAGCAGACAATGTCAGTCTATGTTGTGCCATTTCCGCGTCTTCAAGTTTGGGAGAGCTGTCTTTTGGTCAGTCCGTTCACGGTCTGGGAATCAAGCTAGGCTACAAGTCACATGTTTCAGTTGCCAACTCTCTCATTTCATTATATTCACAATGTGAAGACATCAAGGCTGCTGAAACACTATTCAGAGAAATAGCACTTAAAGATATTGTTTCCTGGAATGCAATGATGGAAGGATTTGCTTCAAATGGAAAGATTAAGGAAGTGTTTGATCTTCTGGTTCAAATGCAAAAAGTAGGGTTTTTCCAGCCTGATATAGTGACATTAATTACCCTACTTCCACTTTGTGCAGAACTGATGCTCTCCAGAGAAGGAAGAACTATCCATGGATATGCAATTCGAAGACAGATGATATCTGATCATGTTATGTTACTGAACAGTCTGATAGGCATGTATTCAAAGTGCAACCTAGTGGAGAAAGCTGAGCTCTTGTTCAATTCTACTGCAGAGAAAGACACAGTCTCATGGAATGCAATGATATCTGGCTATTCCCATAACAGGTATTCTGAAGAAGCTCAAAATTTGTTCACAGAGATGCTACGTTGGGGTCCAAATTGCAGCTCATCAACTGTTTTTGCTATTCTTTCATCCTGCAACTCCCTTAATATTAATAGTATCCACTTCGGAAAATCAGTTCACTGCTGGCAGTTGAAATCTGGATTTTTGAACCACATTCTTTTAATAAATATTCTCATGCACATGTATATCAATTGTGGGGACCTGACAGCCAGTTTCTCAATTTTGCACGAGAATTCTGCTTTAGCAGATATAGCTTCATGGAACACACTAATTGTGGGGTGTGTTCGATGTGACCATTTTAGAGAGGCTCTAGAGACTTTCAACTTGATGAGACAGGAACCTCCTCTAAACTATGACTCTATAACCCTTGTTAGTGCCTTGTCTGCCTGTGCAAACCTGGAACTATTCAACCTAGGGAAGTCTCTTCACGGCCTTACAGTTAAGTCTCCTTTGGGATCAGATACTCGGGTTCAGAACTCGTTAATTACCATGTATGACAGATGCAGGGACATCAATAGTGCCAAAGTAGTGTTTAAATTCTTCTCAACTCCCAATCTGTGCTCATGGAATTGCATGATCTCAGCATTATCTCATAATAGAGAAAGTAGAGAGGCACTGGAACTATTTCTCAATCTTCAGTTCGAACCAAATGAGATCACCATTATTGGTGTTCTCTCAGCTTGCACTCAAATTGGTGTCCTAAGACATGGAAAACAAGTTCATGCCCATGTGTTCAGGACTTGCATTCAAGACAATTCTTTCATATCAGCAGCTCTTATAGATTTGTATAGCAACTGTGGAAGATTAGACACTGCCCTCCAAGTATTCAGACATGCCAAGGAGAAGTCAGAATCAGCTTGGAATTCAATGATTTCTGCATATGGATACCATGGAAAGGGTGAGAAAGCAATCAAACTCTTTCATGAAATGTGTGAGTCAGGAGCAAGGGTGAGCAAAAGCACTTTTGTTAGCCTTTTATCAGCATGCAGCCATTCTGGACTTGTGAACCAAGGTCTTTGGTTTTATGAGTGTATGTTGGAGAGATATGGAGTACAACCTGAGACTGAGCATCAAGTTTATGTGGTTGACATGCTAGGAAGATCAGGTAGACTAGATGAGGCTTATGAGTTTGCTAAGGGGTGTGACAGCTCAGGTGTGTGGGGAGCTCTCCTAAGTGCATGCAACTATCATGGAGAACTCAAGTTGGGGAAAAAAATTGCTCAATATCTCTTTCAACTTGAACCTCAAAATGTTGGACATTACATATCTTTGTCAAATATGTATGTTGCTGCAGGAAGCTGGAAAGATGCTACCGAGTTGAGACAATCTATCCAGGACTTGGGTTTAAGAAAAACCGCAGGTTATAGCCTTGTAGATGTTGGTTTGTGA 2835 0.4007 MKTWVVFQLLLKHVKRLANENLALFGPRISPSSHSISKQNYQNGNFSVVKRHGLPITPYAPAMLSHCHCFCSVIQLFDEMPQRYIHGREIHFELVDYIKLCLKKPKIVTATVAHCAALKIGALAHLPTSTSLLTIYSKAGDFTSSKGLFDEIQNRDAIAWNAIVAASLENKCYRIAMDFFDKMIKAQTGFDSTTLLLIVSASLHMKNFDQGRAIHCVSIKSGMLVDISLGNALVDMYAKCGDLSSSECLYEEIECKDAVSWNSIMRGSLYNRHPEKALCYFKRMSFSEETADNVSLCCAISASSSLGELSFGQSVHGLGIKLGYKSHVSVANSLISLYSQCEDIKAAETLFREIALKDIVSWNAMMEGFASNGKIKEVFDLLVQMQKVGFFQPDIVTLITLLPLCAELMLSREGRTIHGYAIRRQMISDHVMLLNSLIGMYSKCNLVEKAELLFNSTAEKDTVSWNAMISGYSHNRYSEEAQNLFTEMLRWGPNCSSSTVFAILSSCNSLNINSIHFGKSVHCWQLKSGFLNHILLINILMHMYINCGDLTASFSILHENSALADIASWNTLIVGCVRCDHFREALETFNLMRQEPPLNYDSITLVSALSACANLELFNLGKSLHGLTVKSPLGSDTRVQNSLITMYDRCRDINSAKVVFKFFSTPNLCSWNCMISALSHNRESREALELFLNLQFEPNEITIIGVLSACTQIGVLRHGKQVHAHVFRTCIQDNSFISAALIDLYSNCGRLDTALQVFRHAKEKSESAWNSMISAYGYHGKGEKAIKLFHEMCESGARVSKSTFVSLLSACSHSGLVNQGLWFYECMLERYGVQPETEHQVYVVDMLGRSGRLDEAYEFAKGCDSSGVWGALLSACNYHGELKLGKKIAQYLFQLEPQNVGHYISLSNMYVAAGSWKDATELRQSIQDLGLRKTAGYSLVDVGL* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1309 944 TIGRFAM PPR: pentatricopeptide repeat domain 568 594 IPR002885 -
Gso1g1309 944 TIGRFAM PPR: pentatricopeptide repeat domain 463 492 IPR002885 -
Gso1g1309 944 TIGRFAM PPR: pentatricopeptide repeat domain 360 394 IPR002885 -
Gso1g1309 944 TIGRFAM PPR: pentatricopeptide repeat domain 768 796 IPR002885 -
Gso1g1309 944 TIGRFAM PPR: pentatricopeptide repeat domain 670 692 IPR002885 -
Gso1g1309 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 595 IPR002885 -
Gso1g1309 944 Pfam E motif 879 940 IPR046848 -
Gso1g1309 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 765 799 IPR002885 -
Gso1g1309 944 Gene3D Tetratricopeptide repeat domain 738 898 IPR011990 GO:0005515
Gso1g1309 944 Gene3D Tetratricopeptide repeat domain 62 215 IPR011990 GO:0005515
Gso1g1309 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Gso1g1309 944 Pfam PPR repeat 332 354 IPR002885 -
Gso1g1309 944 Pfam PPR repeat 740 764 IPR002885 -
Gso1g1309 944 Pfam PPR repeat 259 284 IPR002885 -
Gso1g1309 944 Pfam PPR repeat 129 155 IPR002885 -
Gso1g1309 944 Pfam PPR repeat 568 594 IPR002885 -
Gso1g1309 944 Pfam PPR repeat 231 255 IPR002885 -
Gso1g1309 944 Pfam PPR repeat 670 692 IPR002885 -
Gso1g1309 944 Pfam PPR repeat 435 455 IPR002885 -
Gso1g1309 944 Gene3D Tetratricopeptide repeat domain 216 315 IPR011990 GO:0005515
Gso1g1309 944 Gene3D Tetratricopeptide repeat domain 316 409 IPR011990 GO:0005515
Gso1g1309 944 Gene3D Tetratricopeptide repeat domain 619 727 IPR011990 GO:0005515
Gso1g1309 944 Gene3D Tetratricopeptide repeat domain 410 515 IPR011990 GO:0005515
Gso1g1309 944 Gene3D Tetratricopeptide repeat domain 519 618 IPR011990 GO:0005515
Gso1g1309 944 PANTHER OS07G0578800 PROTEIN-RELATED 245 557 IPR045215 GO:0003723|GO:0009451
Gso1g1309 944 PANTHER OS07G0578800 PROTEIN-RELATED 95 246 IPR045215 GO:0003723|GO:0009451
Gso1g1309 944 PANTHER OS07G0578800 PROTEIN-RELATED 563 941 IPR045215 GO:0003723|GO:0009451
Gso1g1309 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Gso1g1309 944 Pfam PPR repeat family 357 403 IPR002885 -
Gso1g1309 944 Pfam PPR repeat family 767 812 IPR002885 -
Gso1g1309 944 Pfam PPR repeat family 460 507 IPR002885 -
Gso1g1309 944 PANTHER OS01G0938000 PROTEIN 563 941 - -
Gso1g1309 944 PANTHER OS01G0938000 PROTEIN 95 246 - -
Gso1g1309 944 PANTHER OS01G0938000 PROTEIN 245 557 - -
Gso1g1309 944 SUPERFAMILY ARM repeat 843 922 IPR016024 -
Gso1g1309 944 SUPERFAMILY TPR-like 430 922 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1309 Gso-Chr1 49632262 49635524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1309 292 943 Glycoside Hydrolase AT3G49170 29.596 3.41e-96 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1309 - - gmx:100775736 1877.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1309 1 49632262 49635524 Gso1g1309 1 49632262 49635524 ECH