Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1280 ATGAAATTGAGAATTGCTGCTGCTAATAGACAAGCTTCCATTAAGATGGGGGAGTTCACCGGGAGTGGTGAGTATGTGACTCACGGTGAATTACCTTCCTCCAGGCCAAATCATTCAAGGAAAGTTACAGTTCTTCCTCTTGTGTTTCTCATCTTCTATGAGGTTTCAGGGGGGCCTTTCGGGGTGGAGGATACTGTGCACGCAGCAGGTCCTCTGTTAGCCCTCATTGGATTCTTGCTTTTCCCATTGATATGGAGTGTTCCTGAAGCTTTGATCACTGCTGAGATGGGTACCATGTTCCCTGAAAACAGTGGTTATGTGGTTTGGGTTTCGTCTGCTTTGGGTCCCTATTGGGGGTTTCAACAAGGTTGGATGAAATGGCTGAGTGGGGTGATAGACAATGCATTATACCCAGTTCTATTTCTTGACTATCTGAAGTCAGGAATCCCTGCTTTAGGTGGTGGATTGCCAAGAGTTATTGCAACATGGGGTCTTACTATAGTTCTCACTTACTTGAACTATAGGGGTATGACCATTGTGGGATGGGTTGCTGTTTGTTTAGGGGTTTTCTCACTCCTCCCTTTTGTGGTTATGGGGTTTTTGTCAATTCCAGACCTAAAGCCTTCAAGATGGACTGTGACAAATCTGAATGATGTTAACTGGAATTTGTATCTGAATACTCTATTTTGGAATCTCAACTATTGGGACTCCATAAGTACTCTTGCTGGAGAAGTAGAAAATCCGAAGAAAACTCTTCCGAAGGCTTTGTTTTATGCTGTGATCCTAGTAGTTCTAGGGTACTTCTTTCCTCTTCTAATTGGTACTGGTGCTGTTCCTGTCAACCGTGAGTTGTGGACAGATGGCTACTTCTCAGATATTGCTTTGATTATAGGAGGAGCATGGTTGAGATGGTGGCTTCAGGCTGCTGCTGCGATGTCAAACATGGGAATGTTTGTTGCTGAAATGAGCAGTGACGCCTTCCAACTTCTAGGGATGGCTGAGAGGGGAATGTTGCCTGAGTTCTTCGGCAAGAGGTCTCGCTATGGAACACCTCTCATAGGAATACTCTTCTCAGCCTCCGGCGTGATTTTACTGTCATGGCTGAGCTTTCAAGAAATTGTTGCTGCAGAAAATTTCTTGTACTGCTTTGGAATGATTTTGGAGTTCATTGCGTTCATTCTGTTGAGGATCAAACACCCCAACGCATCCCGGCCTTACAAGATACCGGGGGGAACTGCTGGAGCAATTATCATGTGTATCCCTCCGACAATATTGATTGGTGTTGTGTTGTTTTTCTCCTCCCTTAAAGTAATGGTTATAAGCCTTATTGCTATGGCAATTGGCCTTGTGATGCAGCCTTGTCTCAAATTAGTTGAGAAAAAGAGATGGATGAAGTTTTCCTATAGTTCTGAGCTCCCTGATTTTGGCAATCAGGAGGGCAATCGCTCTTTGGTGCATTAA 1461 0.4435 MKLRIAAANRQASIKMGEFTGSGEYVTHGELPSSRPNHSRKVTVLPLVFLIFYEVSGGPFGVEDTVHAAGPLLALIGFLLFPLIWSVPEALITAEMGTMFPENSGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLKSGIPALGGGLPRVIATWGLTIVLTYLNYRGMTIVGWVAVCLGVFSLLPFVVMGFLSIPDLKPSRWTVTNLNDVNWNLYLNTLFWNLNYWDSISTLAGEVENPKKTLPKALFYAVILVVLGYFFPLLIGTGAVPVNRELWTDGYFSDIALIIGGAWLRWWLQAAAAMSNMGMFVAEMSSDAFQLLGMAERGMLPEFFGKRSRYGTPLIGILFSASGVILLSWLSFQEIVAAENFLYCFGMILEFIAFILLRIKHPNASRPYKIPGGTAGAIIMCIPPTILIGVVLFFSSLKVMVISLIAMAIGLVMQPCLKLVEKKRWMKFSYSSELPDFGNQEGNRSLVH* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1280 486 PIRSF AA_transporter 19 479 - -
Gso1g1280 486 PANTHER POLYAMINE TRANSPORTER PUT1 8 481 - -
Gso1g1280 486 Pfam Amino acid permease 55 432 IPR002293 GO:0016020|GO:0022857|GO:0055085
Gso1g1280 486 PANTHER POLYAMINE TRANSPORTER PUT1 8 481 IPR044566 GO:0022857
Gso1g1280 486 Gene3D Amino acid/polyamine transporter I 37 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1280 Gso-Chr1 49241066 49243834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1280 26 478 Organic Solute Cotransporters AT1G31830 76.316 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1280 - - gmx:100813355 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1280 1 49241066 49243834 Gso1g1280 1 49241066 49243834 ECH
Gso1g1280 1 49241066 49243834 Gso9g1770 9 42137484 42141486 GST