Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1277 ATGGGTAATCCACGGAAACCGAGTACCGCCGACGAGCTTCACACGGCGGCAAGGTCCGGTGATCTCATCGCCGTTAACTCAATTTTGGCTTCAAATCCTTTGGCCGTTAATTCCAGAGATAAGCATTCCAGAACACCTCTGCATTTAGCTGCATTTTCTGGGCAAGCAGAGGTAGTCACTTATCTCTGCAAGCAGAAGGCTGATGTTGGTGCTTCTGCAATGGATGACATGGCTGCAATACACTTTGCTTCACAGAAGGGACATTTAGAAGTTGTCCGCGCTCTACTTTCAGCTGGGGCCTCTCTCAAAGCCACCACCCGCAAAGGCATGACTTCATTACACTATGCTGTTCAAGGTTCCCATATGGAACTCGTCAAGTACTTGGCCAAGAAAGGGGCAAACCTTGGTGCCAAGACAAAGGCAGGAAAGACCCCTTTGGATCTTGCTACCAATGAAGAAATCCGCTCCTTTCTGGAGGAATATGAGAAGTCAGCAAAGAATGGAGAATTGGGAAAGAAAGACAAAGATAAAGCTGAAGAATCTGATCCAAAGACATCCACATTGGGATCTGAAGGTGATTTGAGTTCTGAACCTGCTGCAGCTGCTATTGATGAAGAAGACAATGTGGGAGAGAAGAGGAAGAAGGGTAATGAAGATGGCACAAGAGAAGAAGAGTCATCACAACCAAAAAAGGCTAGAGTTAACTTAAGTCATCTCCAAAGTTCCGACGATACCCAAGAAGAAGAAAACCTGTAG 756 0.4616 MGNPRKPSTADELHTAARSGDLIAVNSILASNPLAVNSRDKHSRTPLHLAAFSGQAEVVTYLCKQKADVGASAMDDMAAIHFASQKGHLEVVRALLSAGASLKATTRKGMTSLHYAVQGSHMELVKYLAKKGANLGAKTKAGKTPLDLATNEEIRSFLEEYEKSAKNGELGKKDKDKAEESDPKTSTLGSEGDLSSEPAAAAIDEEDNVGEKRKKGNEDGTREEESSQPKKARVNLSHLQSSDDTQEEENL* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1277 251 MobiDBLite consensus disorder prediction 205 231 - -
Gso1g1277 251 PANTHER ANKYRIN REPEAT PROTEIN 1 250 - -
Gso1g1277 251 Gene3D - 6 182 IPR036770 -
Gso1g1277 251 Pfam Ankyrin repeats (3 copies) 13 71 IPR002110 GO:0005515
Gso1g1277 251 Pfam Ankyrin repeats (3 copies) 80 160 IPR002110 GO:0005515
Gso1g1277 251 ProSiteProfiles Ankyrin repeat region circular profile. 108 140 - -
Gso1g1277 251 MobiDBLite consensus disorder prediction 165 251 - -
Gso1g1277 251 ProSiteProfiles Ankyrin repeat region circular profile. 75 104 - -
Gso1g1277 251 ProSiteProfiles Ankyrin repeat profile. 42 74 IPR002110 GO:0005515
Gso1g1277 251 SMART ANK_2a 42 71 IPR002110 GO:0005515
Gso1g1277 251 SMART ANK_2a 75 104 IPR002110 GO:0005515
Gso1g1277 251 SMART ANK_2a 108 137 IPR002110 GO:0005515
Gso1g1277 251 PANTHER - 1 250 - -
Gso1g1277 251 ProSiteProfiles Ankyrin repeat region circular profile. 42 69 - -
Gso1g1277 251 SUPERFAMILY Ankyrin repeat 13 153 IPR036770 -
Gso1g1277 251 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Gso1g1277 251 PRINTS Ankyrin repeat signature 43 58 IPR002110 GO:0005515
Gso1g1277 251 PRINTS Ankyrin repeat signature 91 105 IPR002110 GO:0005515
Gso1g1277 251 MobiDBLite consensus disorder prediction 165 186 - -
Gso1g1277 251 ProSiteProfiles Ankyrin repeat profile. 108 140 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1277 Gso-Chr1 49229595 49231506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1277 11 150 Miscellaneous Gene Families AT5G02620 32.168 5.09e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1277 - - gmx:100812821 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1277 1 49229595 49231506 Gso1g1277 1 49229595 49231506 ECH
Gso1g1277 1 49229595 49231506 Gso9g1767 9 42126662 42128605 GST