Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1214 ATGGAAACTTGGGAATGTTCTGGAGACCAAATTGAGTTCAATTCTCAAAGTTTGGGCAATAGTGATAGCAATGCACTAATTTTGCCAGCTAAGAGGGTGAGGAAAAGGAAAGGGAAGGAACAGGAAAATGGAAAAGTCAAATCAAATAAGAAACAAAAATTGAGCAAACCTCAGAAAAGGAAGATGAAGAAGTTAGAGGATGACAAGGAGAAGCAACTTCTGCTGGAAAAAGCCATTAAGACATTGAATGAAAACACACTTCCAGAGTATGCATATCCTCTTTTGCTGTCTTCATGCAATATAAATCGGGATGAGACTATGAAGGAAAAGCGTAGGAGGGCTGTTCATTTATTAAAAGAAGGATTGGAGGTTTCATATGATGGGCTGTCTAAGAAACCTGAGACGGATGAGATTCATTTAGAGCACGCTGATGAAGTCGAAGAAAATGAAATTCAAATTCAACCCATTAGATCAGAGGAAGTCTTAAATACAACATCAGTTTCTTTGGAGTCCTCTCAAGAACCAGTTCATGGCAATGAAGTTGAAAATTATAAATATGTCTCTGAACATCCTGCTGACATTTCCATTGACAAGCATCTTGATGAAATCAGAAGTTCTACCATGTCTTGTTCTACTGATGAAATAAAAAGCACCAAGTCAAAGGATAGGACAGATGAGAACCATAACTCCAATGAATTGAGCAACCTTTCAGATTATTCTGCACCAAGGTGGTCAAATGTTCCTACTGTTGTGCATGTGTATAGACCAACTGAGGTTGAAGACAAAAGAAAGGATCTACCTATAGTTATGATGGAGCAAGAGATAATGGAAGCTATAAATGACCGTTCTAGTGTTATCATATGTGGAGAAACTGGGTGTGGTAAAACAACTCAAGTTCCTCAGTTTCTTTATGAAGCTGGTTATGGTTCAAGTAAGGGTATTATTGGTGTTACTCAACCACGTCGGGTGGCAGTTCTTGCCACAGCTAAGCGTGTGGCTTATGAGCTTGGTCTTCGTCTAGGGAAGGAGGTTGGTTTTCAAGTTAGATATGACAAGAAGATTGGAGAAAGTTGTTCTATCAAGTTTATGACTGATGGAATTTTGCTACGAGAAGTTCAGAATGATATTTTGTTGAGGCGCTATTCTGTCTTAATTCTTGATGAGGCTCATGAGAGGAGCTTGAACACAGACATTCTGATTGGGATGCTCTCACGTGTAATTAAAACCCGCCAAATGATTTATTATGAACAGAAGAAGATGATACTTTCTGGGGAAAGTGTAAGTCCTGAAAAAATGATTTTTCCATTAAAACTTGTGCTTATGAGTGCCACCTTGCGAGTACAAGACTTCACTTCTGGAAAGTTATTCCATACTACTCCACCAGTGATAGAAGTTCCTACAAGGCAATTTCCAGTAACAGCGTATTTTGCAAAGAAAACAGAGAAAACAGATTACATTGGAGAAGCATATAAGAAGGTCTTGGCTATTCACAAGAGGTTGCCACCTGGGGGCATACTTGTCTTTGTTACTGGGCAAAGGGAAGTAGAGGACTTGTGCAGGAAGTTACGCAAAGCATCAAGGGAGTTTATCAAGAAAAAAGTTGAAGGGTCTGTGGAAACTGATAGCACTGTGGTCCATGAAACAAATTCTGTTGAGGGAGTAAATATTAATGAGATCAATGAAGCATTTGAGGTTCATGGAAGTTCGTCTATCCAGCAAACCGATAGGTTTAGTGGCTATGATGAAGATGAGGACGATGTAAATTGGAATGAATCTGAATTTTCTTATGATTCAGAAACAGATAGTGAACTGGAATTTGATGAGGATGATGATAATCTTGAGCTTTCAGAGAACAGAAGTAATATTGTTGATGTCTTAGGACAGGCAGGAAGTCTTGCTTCATTGAAGGCTGCTTTTGAAAAATTGTCTGGGCAAGCCACATTAAGCTCCTCAAATGGAGAGGAGACATCTGTGAATATAGAAGGTAATTTAGATCAATCAAAAGTTTTCAGGGAGAAAAGAGCCAAAGAAAATTGCAGTACTCCAGGTGCACTCTGTGTTCTACCTCTGTATGCCATGCTTCCTGCAGCAGCTCAACTTCGTGTATTTGAAGAAGTCGGGGATGGAGAGCGCCTTGTTGTTGTTGCCACAAATGTTGCTGAAACATCTTTAACAATCCCAGGGATAAAGTATGTGGTTGATACTGGGAGAGAAAAGGTGAAGAATTATGATCCCTCTAATGGCATGGAGACATATGAAGTACAATGGATAAGTAAGGCATCTGCCGCACAGCGTGCAGGCAGATCTGGAAGAACTGGACCTGGACACTGTTACCGTCTCTATTCTTCTGCAGCCTTTAGTAATGAATTTCCTGAGCACTCTCCTGCCGAAGTTGAGAAAGTACCTGTTCATGGTGTTGTCCTTCTCTTGAAATCCATGCATATTAAAAAGGTTGCAAACTTCCCATTTCCTACTTCTCTTAAAGATTCTTCTCTGCTTGAGGCTGAGAATTGCTTGAAAGCTCTTGAAGCACTTGATAACAAGGATGAACTTACACTTTTAGGAAAAGCCATGGCACATTATCCCTTGAGTCCTCGTCATTCTAGAATGCTTCTCACTGTCATTAAAAATACAAGGCATGAGCATAAATGTAATCCAAATATGCTTCTGGCATATGCTGTTGCAGCCGCTGCAGCTTTGAGCTTGTCAAACCCTTTTGTAATGCAATATGAAGATGATAGCAGCAGAGATTTAGAGATGGTTGAGAAATCTAGCTTGGGAGACGGTGAGAAAGGCATTGGTAAAAAAGAAAAGTCAAGGAAAAAGAAACTAAAAGAAACAGCTAAAGTTGCACGTGAAAAATTTAGAGTTGTCACCAGTGATGCCCTAACCATAGCTTATGCTTTGCAGTGTTTTGAACATTCAGAGAAATCAGCTGAATTCTGTGATGACAATGCATTGCATTTCAAAACCATGGATGAAATGTCCAAACTTCGACAACAACTACTTAAACTGGTCTTTTATCAGAGTGATAAAGGTGGTTTTGAAGAAGAGTATTCATGGATTCATGGAAGTTTAGAGGATGTAGAACGTGCTTGGCAGGCTTCTTCAGAAAAATATCCTCTTTCTCTGGTTGAGGAAAGGCTCATCTGTCAAGCAATATGTGCTGGCTGGGCAGATAGGGTTGCTAAACGTATTACAGCTTCTTCTAGGGCCTCTGATGGAGAGAAAACTTCTCATGCTTTAAAGTATCAATCAAGCATGGTTGATGAAAGTGTTTTCCTTCATCGCTGGTCATCAGCTTCCATAGTAGGCCCCGAGTTTTTGGTTTACAATGAACTGTTAGAGACCAAAAGACCAAACAAAGAAGGGATAACAAGTGCCAAGAGAGCATATATGCACGGAGTAACAAGTGTAGAGCCAGCTTGGTTAGTCGAGAATGCAAAGTCTTCATGCATCTTCTCTCCTCCCCTGACGGATCCTAGACCTTATTATGATGCCCGGACTGACCAAGTAAAATGTTGGGTAATCCCAACCTTTGGGCGTTTCTGTTGGGAGCTTCCGAAGCATTCATTGCCCATTAGCAATGACGAACATCAGGTGCAAGTGTTTGCCTATGCTTTGCTTGAAGGCCAGGTGTGTCCATGTTTAAAATCTGTTAGAAAATACATGTCAGCCCCCCCTGAAAGTATTATGAAGAGAGAAGCATTTGGTCAAAAAAGGGTGGGAAATCTTTTGAGCAAGTTAAAGAGCAGGCTGATTGATAGCTCTGCTATGCTCAGAATGGTGTGGAAGGAGAATCCAAGGGAATTATTTTCAGAAATTTTGGATTGGTTTCAGCAGAGTTTTCACAAGCACTTTGAAGAGTTATGGTTACAAATGCTTAATGAAGTGCTTATGGAGAAACAAGAAAGCCCTCTTCATAAAAGTTCTAAAAAAAAGAAAGGAAAATATAAACCACTATGA 3966 0.4002 METWECSGDQIEFNSQSLGNSDSNALILPAKRVRKRKGKEQENGKVKSNKKQKLSKPQKRKMKKLEDDKEKQLLLEKAIKTLNENTLPEYAYPLLLSSCNINRDETMKEKRRRAVHLLKEGLEVSYDGLSKKPETDEIHLEHADEVEENEIQIQPIRSEEVLNTTSVSLESSQEPVHGNEVENYKYVSEHPADISIDKHLDEIRSSTMSCSTDEIKSTKSKDRTDENHNSNELSNLSDYSAPRWSNVPTVVHVYRPTEVEDKRKDLPIVMMEQEIMEAINDRSSVIICGETGCGKTTQVPQFLYEAGYGSSKGIIGVTQPRRVAVLATAKRVAYELGLRLGKEVGFQVRYDKKIGESCSIKFMTDGILLREVQNDILLRRYSVLILDEAHERSLNTDILIGMLSRVIKTRQMIYYEQKKMILSGESVSPEKMIFPLKLVLMSATLRVQDFTSGKLFHTTPPVIEVPTRQFPVTAYFAKKTEKTDYIGEAYKKVLAIHKRLPPGGILVFVTGQREVEDLCRKLRKASREFIKKKVEGSVETDSTVVHETNSVEGVNINEINEAFEVHGSSSIQQTDRFSGYDEDEDDVNWNESEFSYDSETDSELEFDEDDDNLELSENRSNIVDVLGQAGSLASLKAAFEKLSGQATLSSSNGEETSVNIEGNLDQSKVFREKRAKENCSTPGALCVLPLYAMLPAAAQLRVFEEVGDGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDPSNGMETYEVQWISKASAAQRAGRSGRTGPGHCYRLYSSAAFSNEFPEHSPAEVEKVPVHGVVLLLKSMHIKKVANFPFPTSLKDSSLLEAENCLKALEALDNKDELTLLGKAMAHYPLSPRHSRMLLTVIKNTRHEHKCNPNMLLAYAVAAAAALSLSNPFVMQYEDDSSRDLEMVEKSSLGDGEKGIGKKEKSRKKKLKETAKVAREKFRVVTSDALTIAYALQCFEHSEKSAEFCDDNALHFKTMDEMSKLRQQLLKLVFYQSDKGGFEEEYSWIHGSLEDVERAWQASSEKYPLSLVEERLICQAICAGWADRVAKRITASSRASDGEKTSHALKYQSSMVDESVFLHRWSSASIVGPEFLVYNELLETKRPNKEGITSAKRAYMHGVTSVEPAWLVENAKSSCIFSPPLTDPRPYYDARTDQVKCWVIPTFGRFCWELPKHSLPISNDEHQVQVFAYALLEGQVCPCLKSVRKYMSAPPESIMKREAFGQKRVGNLLSKLKSRLIDSSAMLRMVWKENPRELFSEILDWFQQSFHKHFEELWLQMLNEVLMEKQESPLHKSSKKKKGKYKPL* 1322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1214 1321 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 382 391 IPR002464 -
Gso1g1214 1321 PANTHER - 245 1304 - -
Gso1g1214 1321 PANTHER - 21 127 - -
Gso1g1214 1321 MobiDBLite consensus disorder prediction 922 943 - -
Gso1g1214 1321 Gene3D - 469 573 IPR027417 -
Gso1g1214 1321 MobiDBLite consensus disorder prediction 215 229 - -
Gso1g1214 1321 SMART ultradead3 264 475 IPR014001 -
Gso1g1214 1321 SMART ha2_5 834 966 IPR007502 GO:0004386
Gso1g1214 1321 SMART helicmild6 673 773 IPR001650 -
Gso1g1214 1321 Pfam DEAD/DEAH box helicase 273 449 IPR011545 GO:0003676|GO:0005524
Gso1g1214 1321 Pfam Helicase conserved C-terminal domain 665 773 IPR001650 -
Gso1g1214 1321 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 634 814 IPR001650 -
Gso1g1214 1321 MobiDBLite consensus disorder prediction 205 239 - -
Gso1g1214 1321 Gene3D - 639 794 IPR027417 -
Gso1g1214 1321 CDD SF2_C_RHA 682 781 - -
Gso1g1214 1321 Coils Coil 65 85 - -
Gso1g1214 1321 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 276 463 IPR014001 -
Gso1g1214 1321 MobiDBLite consensus disorder prediction 15 67 - -
Gso1g1214 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 877 IPR027417 -
Gso1g1214 1321 CDD DEXHc_DHX37 266 465 - -
Gso1g1214 1321 Gene3D - 211 468 IPR027417 -
Gso1g1214 1321 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1050 1148 IPR011709 -
Gso1g1214 1321 MobiDBLite consensus disorder prediction 35 49 - -
Gso1g1214 1321 Gene3D - 824 928 - -
Gso1g1214 1321 PANTHER ATP-DEPENDENT RNA HELICASE 21 127 - -
Gso1g1214 1321 PANTHER ATP-DEPENDENT RNA HELICASE 245 1304 - -
Gso1g1214 1321 Pfam Helicase associated domain (HA2) 835 964 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1214 Gso-Chr1 48114689 48123817 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1214 K14780 - gmx:100788201 2469.11