Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1178 ATGTCCCAACTGAAGCCAATGTCGCATATAGACAGTGCCCCTTCGACCCCAGGGAAGTTCAAGATGGAGAAAGCTTCGTACTTCAACCGCGTGCGGTGGCACACCTCGCTGGCGAAGCTCGCAGTGTGGTCCTTCGTATTCCTGGGCGCGATCTTGATCTTTTTCCTCCGGTCGCCGGCGTCGTCGCCGGTTCCGGCGGACCTCTCCCGGCGGTCTCTGCGGACCTACAACTGGGGCGGACCCGTCTGGGAGAAACGGGTCCGGGCCTCCGCCCAGATCCGTTCCCGAAACGGGTTCGCCGTTTTGGTCACCGGGGCCGCCGGTTTCGTCGGCACCCATGTCTCCGCGGCCCTCAAACGCCGCGGAGACGGGGTGCTGGGACTTGATAATTTCAATGACTATTATGACCCTTCACTAAAGCGTGCACGCCAGGGACTCTTGGAGCGCTCTGGGGTGTACATAGTGGAGGGTGATATCAATGATGAAGCACTCTTGAGGAAGCTTTTTGAGGTTGTGCCTTTCACTCATGTGATGCACTTGGCTGCTCAGGCTGGTGTGAGGTATGCCATGGAGAATCCTGGCTCTTATGTGCATAGCAACATTGCTGGATTTGTGAATTTGCTTGAGGTTTGTAAGAGTGTGAATCCACAACCTGCTATTGTGTGGGCCTCTAGTAGCTCAGTTTATGGACTCAACACTAAGGTTCCATTCTCTGAGAGGGATAGGACTGATCAGCCTGCTAGTTTGTATGCTGCAACTAAGAAGGCTGGTGAGGAGATTGCTCACACTTATAACCATATCTATGGTCTTTCATTGACTGGCTTGAGGTTCTTCACTGTTTATGGCCCTTGGGGTAGGCCTGATATGGCTTACTTCTTCTTTACTAGGGATCTTTTGAAGGGGAAGTCCATCCCTATATTTGAGGCCGCAAATCATGGAACCGTTGCGAGGGATTTTACTTACATTGATGATATTGTGAGGGGTTGTTTGGGGGCTTTGGATACTGCAGAGAAGAGCACAGGAAGTGGGGGGAAGAAGAGGGGGCCGGCACAGTTGAGGATTTTCAATTTGGGGAACACTTCGCCTGTTCCAGTTAGTGATCTTGTGAGCATTTTGGAGAGGCTTCTGAAGGTTAAGGCGAAGAGGAACATAATGAAGTTGCCGCGGAATGGGGATGTGCAGTTTACTCATGCCAACATTAGCTATGCTCAGATGGAGCTTGGGTACAAGCCGACCACGGATCTGCAGAGTGGTTTGAAGAAATTCGTGCGGTGGTACCTGAATTACTATTCTGGCGGGAAGAAAGCTGTTGAGTGA 1317 0.5194 MSQLKPMSHIDSAPSTPGKFKMEKASYFNRVRWHTSLAKLAVWSFVFLGAILIFFLRSPASSPVPADLSRRSLRTYNWGGPVWEKRVRASAQIRSRNGFAVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKRARQGLLERSGVYIVEGDINDEALLRKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSVNPQPAIVWASSSSVYGLNTKVPFSERDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDLLKGKSIPIFEAANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKRGPAQLRIFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVQFTHANISYAQMELGYKPTTDLQSGLKKFVRWYLNYYSGGKKAVE* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1178 438 PRINTS Nucleotide sugar epimerase signature 127 143 - -
Gso1g1178 438 PRINTS Nucleotide sugar epimerase signature 317 332 - -
Gso1g1178 438 PRINTS Nucleotide sugar epimerase signature 352 367 - -
Gso1g1178 438 PRINTS Nucleotide sugar epimerase signature 392 409 - -
Gso1g1178 438 Pfam NAD dependent epimerase/dehydratase family 101 338 IPR001509 -
Gso1g1178 438 PANTHER UDP-GLUCURONATE 4-EPIMERASE 2-RELATED 10 436 - -
Gso1g1178 438 Gene3D - 100 432 - -
Gso1g1178 438 PANTHER EPIMERASE-RELATED 10 436 - -
Gso1g1178 438 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 98 431 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1178 Gso-Chr1 47248372 47250569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1178 4 436 Miscellaneous Gene Families AT4G00110 86.836 0.0 782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1178 K08679 - gmx:100788739 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1178 1 47248372 47250569 Gso1g1178 1 47248372 47250569 ECH