Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0981 ATGGCCGTCGTTGGCGTCCTCGCGCTGCAAGGATCTTTCAACGAACACATAGCTGCACTTAGAAGGTTAGGAGTGAAAGGTGTGGAGATTCGAAAGCCGGAGCAGCTTAACACAATTAGTTCCCTCATAATCCCTGGTGGAGAAAGCACCACTATGGCTAAGCTCGCCGAGTATCACAACTTGTTTCCTGCTTTACGAGAGTTTGTACAAATGGGAAAGCCTGTTTGGGGAACCTGTGCAGGGCTTATATTCTTGGCAAATAAAGCTATGGGACAGAAGACTGGTGGACAATATTTGGTTGGTGGACTTGATTGTACAGTGCATAGAAATTTCTTTGGCAGCCAGATTCAAAGCTTTGAGGCAGAGCTTTCAGTGCCAGAGCTCGTCTCCAAAGAAGGAGGTCCTGAAACATTTCGTGGAATTTTTATTCGTGCCCCTGCAATTCTTGAAGCAGGGCCAGAAGTTCAAGTGCTGGCTGATTATCTTGTACCTTCTAGCAGATTGTTGAGTTCCGATTCCTCTATTGAAGACAAAATGGAGAATGCTGAGGAAGAAAGTAAAGTTATAGTTGCTGTGAGACAAGGGAACATATTAGCGACTGCTTTCCATCCTGAATTGACAGCTGATACTCGATGGCATAGTTATTTCGTAAAAATGTCAAATGAAATTGGAGAAGAGGCCTCTTCAAGTAGCCTTGTTCCTGCACAAGTCAGTACAAGTCAATACCAACAGCCCCGGAATGACCTTCCTATCTTTCAATAG 762 0.4462 MAVVGVLALQGSFNEHIAALRRLGVKGVEIRKPEQLNTISSLIIPGGESTTMAKLAEYHNLFPALREFVQMGKPVWGTCAGLIFLANKAMGQKTGGQYLVGGLDCTVHRNFFGSQIQSFEAELSVPELVSKEGGPETFRGIFIRAPAILEAGPEVQVLADYLVPSSRLLSSDSSIEDKMENAEEESKVIVAVRQGNILATAFHPELTADTRWHSYFVKMSNEIGEEASSSSLVPAQVSTSQYQQPRNDLPIFQ* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0981 253 PANTHER PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO 2 252 IPR002161 GO:0004359|GO:0042819|GO:0042823
Gso1g0981 253 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 3 229 - -
Gso1g0981 253 MobiDBLite consensus disorder prediction 228 253 - -
Gso1g0981 253 Gene3D - 1 230 IPR029062 -
Gso1g0981 253 CDD GATase1_PB 4 217 IPR002161 GO:0004359|GO:0042819|GO:0042823
Gso1g0981 253 PANTHER - 2 252 - -
Gso1g0981 253 PIRSF Glut_amidoT_SNO 1 224 IPR002161 GO:0004359|GO:0042819|GO:0042823
Gso1g0981 253 TIGRFAM PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 4 161 IPR002161 GO:0004359|GO:0042819|GO:0042823
Gso1g0981 253 ProSitePatterns PdxT/SNO family family signature. 41 51 IPR021196 -
Gso1g0981 253 SUPERFAMILY Class I glutamine amidotransferase-like 3 219 IPR029062 -
Gso1g0981 253 ProSiteProfiles PdxT/SNO family profile. 3 221 IPR002161 GO:0004359|GO:0042819|GO:0042823
Gso1g0981 253 Pfam SNO glutamine amidotransferase family 6 220 IPR002161 GO:0004359|GO:0042819|GO:0042823
Gso1g0981 253 Hamap Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 4 219 IPR002161 GO:0004359|GO:0042819|GO:0042823
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0981 Gso-Chr1 39986901 39992244 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0981 K08681 - gmx:100786227 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0981 1 39986901 39992244 Gso3g0493 3 9105162 9109559 GST