Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0348 ATGGAAGGTGTGAAATTGGAGGACAGATGGGGATACCAGGTTGCAACTTCTTCTCAGGCCTGCGTTTCAGCCATCAACTCCTACTACCATCAGGTTCTCATCTATGGTAGAGAGAGGTCTGTGATTCTGGAAGCAGTGGCACATGACAAACACTGTGTCTTGGCCAACATCTTGGCAGCACATTTCCTTTACTCCTCTGGTTCTTCTCGTGCTCTCACTTGTCTTCATGCCGCTAAGTCCCACCTTGAACATGCCACCTTGTACGAGAAACTAGTTTTCGATGCCATCAGTTATATGCTATCTGAAGATAGAGACGATGATGTAGCTGTTGAATTGCATTCTAAGCTTCTAAAGGAGTTCCCAAGAGATCTGCTTTCTCTAAAGAGAGCACAAGTCTTATGCTTCTACATGGGTCTGCCTGGTCTTTCTTTATCTCTTATTCAGCAGATTCTGCCTCACAATGAAGGAGAAAATTATATATATGGCATGCTTGCTTTTCCTTTGTTGGAGCTTGGACGGATGGAGGAAGCTGAGGAAGCTGCCAAAAGGGGATTTGAAATCAATAAGCAAGACTGCTGGTCACAGCATGCTTTATGCCATGTCCTTCAGTATAAGTGCTGTTTTAGAGAAGCTGTTAAGTTCATGGAAGAATGTTCATCATCATGGGGTTCTTCTTCATCTTTTATGTTGACACACAATTGGTGGCATGTAGCACTTTGTTACTTAGAAGGTAATGCTCCGAGACAAAGAGTGCTAGAGATATATGACAATTATATATGGAAGGAGCTAGAAAGAAATGATTCTATGAGTGCAGACGTTTACTTAAATGCCGCGGCTCTGCTTTTGCAGTTGTATGTACGTGGTGAATTGGATATTGTTGGTGATCGTCTCAAGATTCTATCAGAATGCCTAACTAATCAAGAAAACTGGTATATGGAATGGCACTTTGATGTATTGATAGTGTGGACTTTGGCAAAGACCGGAGAAATTTCTAAAGCAGAAGATCTTCTAAAGGGCTTAAAAAACAGGCTTTTGAGGATGACTAAAAAGAAGCAACAACGAATGCAGAGAGGAATGATGCTTGCAGAAGCACTCTACGCTTATGGAAGAGATGACGACAATCGTGGACTGGAACTACTTGATCCAAATTTTGATGCCACTGATTACAAGATCATTGGGGCATCTGATGAACAAGTCGACGTATTCAATGAAGTTTGGTATAACATGTTGCTGAATACTGGAAAACCGTTGAAGGCAATTGAAGTGTTAGAGAAGCAAATCAAGAAGAGAGATGGCGTCCCCTACTTGTGGCGTCTACTAGAGAGGGCATACAAACTAGCTAACAAAGAAGAAGAAGAAAGAATTGCGAACGAGAAGGCCACGGCTTTGGAGAGTCGTTACTTCAATTAA 1410 0.4199 MEGVKLEDRWGYQVATSSQACVSAINSYYHQVLIYGRERSVILEAVAHDKHCVLANILAAHFLYSSGSSRALTCLHAAKSHLEHATLYEKLVFDAISYMLSEDRDDDVAVELHSKLLKEFPRDLLSLKRAQVLCFYMGLPGLSLSLIQQILPHNEGENYIYGMLAFPLLELGRMEEAEEAAKRGFEINKQDCWSQHALCHVLQYKCCFREAVKFMEECSSSWGSSSSFMLTHNWWHVALCYLEGNAPRQRVLEIYDNYIWKELERNDSMSADVYLNAAALLLQLYVRGELDIVGDRLKILSECLTNQENWYMEWHFDVLIVWTLAKTGEISKAEDLLKGLKNRLLRMTKKKQQRMQRGMMLAEALYAYGRDDDNRGLELLDPNFDATDYKIIGASDEQVDVFNEVWYNMLLNTGKPLKAIEVLEKQIKKRDGVPYLWRLLERAYKLANKEEEERIANEKATALESRYFN* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0348 469 SUPERFAMILY TPR-like 100 228 IPR011990 GO:0005515
Gso1g0348 469 CDD StaR_like 48 407 IPR033891 -
Gso1g0348 469 Gene3D Tetratricopeptide repeat domain 35 468 IPR011990 GO:0005515
Gso1g0348 469 Coils Coil 446 466 - -
Gso1g0348 469 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Gso1g0348 469 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 38 6 466 IPR033891 -
Gso1g0348 469 Coils Coil 330 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0348 Gso-Chr1 4355919 4361511 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0348 - - gmx:100789977 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0348 1 4355919 4361511 Gso2g0206 2 2151278 2157507 GST