Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0320 ATGAGCACTTCTCATCAACAACGTTATCTCCTCTTCGCTTTCACTACGTTAATAGTTTTCTTCAGCTTCAACACTACACCAGTTTCGGCTCGTTTGTTCCCCAACGTTTCCTCCATCCCAAGGTGGAACACATCCCACGCGCCACCTGATAGCGCGTGGAACGCGTATCGCAATTTCACTGGGTGCCGCCCGGGAAAAACATATAACGGTCTTTCGAATCTGAAAAACTACTTTCATTATTTTGGCTACATCTCCAACGTGTCCTCGAAGTCGTCGAATTTTAGCGACGATTTCGATGATGCGTTGGAGGCAGCCGTTAGAGCCTACCAGAAGAACTTCAACCTCAACATCACAGGGGAGCTCGACGACCCCACGATGAACCAAATCGTCAAGCCACGCTGCGGCGTGGCTGACATCATCAACGGAACCACAACAATGAACTCCGGCAAGACAAACACCACGGATTCACCGACGTTCCACACGGTAGCGCATTATTCTTTCTTTGACGGCCAGCCGCGGTGGCCGGTGGGGACACAAGAACTAACCTACGCCTTCGATCCCGATAACGCTCTCGACGACGTGATTAAGACCGTGTTTGGCAACGCGTTTAGCAGATGGTCAGAGGTGACCACGATTTCTTTCCGCGAAACGGCGTCGTATGTGGCTGCGGACATAAGAATAGGGTTTTACGGTGGGGACCACGGCGACGGCGAACCTTTTGATGGCGTGTTGGGGACGTTGGCGCACGCGTTCTCGCCGACGAACGGGATGTTCCACCTGGACTCGGCGGAGGACTGGGTGGCCTCCGGCGACGTGACGAAGGCGTCGCTGTCGAACGCGGTGGATCTTGAATCCGTGGCGGTGCATGAGATTGGGCACTTGCTAGGGTTAGGGCACTCTTCGGTTGAAGATGCTATTATGTACCCTACGATTACCGCGAGGACGAGGAAGGTGGAGCTCAACGAAGATGATATACAAGGGATTCAGGTTCTCTACGGTTCCAACCCTAATTTCACTGGGACTCCTGCTACCTCTTCGCGTGAGAGCGACACGAGCGATGGTGGTGTTCGGCACGTGGGAGCCACGTGCGGTGTGTTCTTCTCTCTTTTGTTCTTCGTTGTGTTTGGATTGCACGTGTGA 1140 0.5342 MSTSHQQRYLLFAFTTLIVFFSFNTTPVSARLFPNVSSIPRWNTSHAPPDSAWNAYRNFTGCRPGKTYNGLSNLKNYFHYFGYISNVSSKSSNFSDDFDDALEAAVRAYQKNFNLNITGELDDPTMNQIVKPRCGVADIINGTTTMNSGKTNTTDSPTFHTVAHYSFFDGQPRWPVGTQELTYAFDPDNALDDVIKTVFGNAFSRWSEVTTISFRETASYVAADIRIGFYGGDHGDGEPFDGVLGTLAHAFSPTNGMFHLDSAEDWVASGDVTKASLSNAVDLESVAVHEIGHLLGLGHSSVEDAIMYPTITARTRKVELNEDDIQGIQVLYGSNPNFTGTPATSSRESDTSDGGVRHVGATCGVFFSLLFFVVFGLHV* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0320 379 Pfam Matrixin 178 333 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Gso1g0320 379 SUPERFAMILY PGBD-like 60 139 IPR036365 -
Gso1g0320 379 CDD ZnMc_MMP 173 333 IPR033739 GO:0008237|GO:0008270
Gso1g0320 379 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 168 337 - -
Gso1g0320 379 PANTHER MATRIX METALLOPROTEINASE 8 379 - -
Gso1g0320 379 SMART col_5 170 334 IPR006026 GO:0006508|GO:0008237|GO:0008270
Gso1g0320 379 Pfam Putative peptidoglycan binding domain 70 128 IPR002477 -
Gso1g0320 379 PANTHER MATRIX METALLOPROTEINASE 8 379 - -
Gso1g0320 379 PRINTS Matrixin signature 129 142 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gso1g0320 379 PRINTS Matrixin signature 199 214 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gso1g0320 379 PRINTS Matrixin signature 223 251 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gso1g0320 379 PRINTS Matrixin signature 286 311 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gso1g0320 379 PRINTS Matrixin signature 320 333 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gso1g0320 379 Gene3D Collagenase (Catalytic Domain) 61 339 IPR024079 GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0320 Gso-Chr1 3956806 3958542 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0320 - - gmx:100803218 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0320 1 3956806 3958542 Gso2g0234 2 2470642 2472183 GST