Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0160 ATGTGTCTCTCACTCTCTTCACCAGCTATGGCATCCGAGGAGCCAATGGATGCTCCCCCCGCGCCGAATCTGCTTTCCGAAACCCTAAGTGCCGCCGAATTGGTCGCCGATTTGGGCGGTGATTACGCTCTGTTCCCGCCCGGCGGCGGTTCTACCGAGTTCCGGCAGCTCGACGACGACGTCTCGTCTTCGCTTTGGTCGTCGGCGTTGGTTTCGAATTCGCGCGTCTCCGCAGTGGCGCCGGAATCGTGGATTGCTCCACAAGGAAATTGGCTCTTACCTGAAAATGAAGGTTCAGACAATGCTGAATCTGCCTCTGAAGTCGTGCCTTCTAAGATGGGAGCAGGGCTTGTGAATCTTGGCAATACTTGCTTTCTCAATGCTATTCTGCAATGCTTTACGCATACAGTGCCTCTGGTGCAGGGTCTTCGTTCCAGCACTCATCCTATCCCTTGTTCTGGTCATAAGGATGGGTTCTGTGTCATTTGTGCTCTTCGTATCCATGTTGAACGTTCCTTAGCGGCTTCAGGAGGGACATTTTCACCCTTGGAATTTGTGAACAATTTGAAATATTTTTCTTCTGATTTTAGAAGATACCAGCAGGAAGATGCCCATGAATTTATGCAGTGTACCTTGGATAAACTGGAAAGATGTTTCCTAGGTTTGAAGAAGAGTAATTTAAATTTTGAAGATGTTAATCTTGTAGAGAAAGTATTTGGAGGCCGTCTCATTAGCAAACTTCAATGTTCTACTTGTGACCACACTTCCAACACTTTTGAGCCACTTATTGATATGAGTTTAGAGATAGATAATGTAGATTCTCTTCCAAGTGCTCTGGAATCTTTTACTAAGGTGGAAAACATTGATGATAACCTTCAATGTGATAACTGCAAGGAAGAAGTGTCCATGGAGAAGCAGCTTATGTTGGATCAGACACCATCAGTTGCTGCATTTCATTTAAAGAGATTTAAGACAGATGGGATCCTTGTTGAAAAGATTGATAAGCATATTGATTTCCCATTGGAGTTAGACTTGCAGCCTTACACCATTAAAGTTATGGAAGACCCAGGGGCTGAAAATGATGTACCATTGAAATATGATTTATATGCCATTGTTGTGCATACTGGACTTTCATCTACTTCAGGGCATTACTTCTGCTTTGTTCGCTCAGCTCCAGACACATGGCATAAGTTGGATGATTCAATGGTTACTGAGGTCTCAGTAGAAACAGTACTGTCTCAGGAAGCATACATATTGTTTTATGCGCGACAGGGTACTCCATGGTTTTTGAGTATTATGGAAGAGAAAACACAATGTTTGAATCCAAATATTATGAGTACATCTCCTAAGTCTGTTTTAGACGTTGGTGACAACATGTGTAAATCAAATCCTATTTTACTTCCAAATATTGAAAGAAGTGTGGCTGAAGAATCCAAAGAGTATTCTGAGCCTCAGTTTGATTATTATTGTCAAGAAGATCATGGTTTTCTTGAAATAAATGACACTGAAGATGTGACTCATGGCTCTGGACAATTGCTCTCTGGATCAAATCAGGAAATTTTTTATTCGAATACCTCTAAAGATGTTGATGCCCAAAAGCTGTTTAGTAGTAGGGGGGGACATAAAGTTGCTACTCATGGCTGCGGACAATTGCTCTCTGGGTTAAATCAGGAAAGTGTTGGTTTGAATAGCTCAAAAAACGTTGATGCCCAACAGCTGTTTAGAAACTGGACCACCTTGGATGATAGTGCCATGTTTGACATTGGGAATTCATATATTGAGAACGGTAGTCTTGATAATGACAATACCTTTCAGGAAGCTGTTGATTTTTTAGAGAAGGCCGGTTTCCATTCTTTAACTCTGCCTAGCTTGCCTCCTGATGATGCTCCAGATAAGTTCCACATCTCATGTGATAATTTGAAGAGACAGAATCATCGGAGCTGTAAAAGATCATCAAATAAGTTAACTGGGGATTCTGAAGAAAGACGAGAAGCTGTGAAATATCTTTGCAAGAATCGTTCAAGGAGAGGGGCACTTTTGAAATTTGTTACTCCAAACAAAGTTTTGGACAAGAAGAGAAAAAATATGGATTCATTGCAGTGTAAGAAAAGCACCAAAAAACCAAGCCATACATCTGTCACCCCCCCTGTGGCCGCAGGAAGTTCACGGTGA 2172 0.4208 MCLSLSSPAMASEEPMDAPPAPNLLSETLSAAELVADLGGDYALFPPGGGSTEFRQLDDDVSSSLWSSALVSNSRVSAVAPESWIAPQGNWLLPENEGSDNAESASEVVPSKMGAGLVNLGNTCFLNAILQCFTHTVPLVQGLRSSTHPIPCSGHKDGFCVICALRIHVERSLAASGGTFSPLEFVNNLKYFSSDFRRYQQEDAHEFMQCTLDKLERCFLGLKKSNLNFEDVNLVEKVFGGRLISKLQCSTCDHTSNTFEPLIDMSLEIDNVDSLPSALESFTKVENIDDNLQCDNCKEEVSMEKQLMLDQTPSVAAFHLKRFKTDGILVEKIDKHIDFPLELDLQPYTIKVMEDPGAENDVPLKYDLYAIVVHTGLSSTSGHYFCFVRSAPDTWHKLDDSMVTEVSVETVLSQEAYILFYARQGTPWFLSIMEEKTQCLNPNIMSTSPKSVLDVGDNMCKSNPILLPNIERSVAEESKEYSEPQFDYYCQEDHGFLEINDTEDVTHGSGQLLSGSNQEIFYSNTSKDVDAQKLFSSRGGHKVATHGCGQLLSGLNQESVGLNSSKNVDAQQLFRNWTTLDDSAMFDIGNSYIENGSLDNDNTFQEAVDFLEKAGFHSLTLPSLPPDDAPDKFHISCDNLKRQNHRSCKRSSNKLTGDSEERREAVKYLCKNRSRRGALLKFVTPNKVLDKKRKNMDSLQCKKSTKKPSHTSVTPPVAAGSSR* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0160 723 MobiDBLite consensus disorder prediction 1 24 - -
Gso1g0160 723 Pfam Ubiquitin carboxyl-terminal hydrolase 116 421 IPR001394 GO:0004843|GO:0016579
Gso1g0160 723 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 115 424 IPR028889 -
Gso1g0160 723 MobiDBLite consensus disorder prediction 691 723 - -
Gso1g0160 723 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 109 463 - -
Gso1g0160 723 SUPERFAMILY Cysteine proteinases 114 423 IPR038765 -
Gso1g0160 723 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 116 131 IPR018200 GO:0004843|GO:0006511
Gso1g0160 723 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 109 463 - -
Gso1g0160 723 Gene3D Cysteine proteinases 111 428 - -
Gso1g0160 723 MobiDBLite consensus disorder prediction 705 723 - -
Gso1g0160 723 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 366 384 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0160 Gso-Chr1 1787538 1791745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0160 110 423 Miscellaneous Gene Families AT4G31670 35.604 2.21e-56 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0160 K11855 - gmx:100806936 1447.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0160 1 1787538 1791745 Gso1g0160 1 1787538 1791745 ECH
Gso1g0160 1 1787538 1791745 Gso9g1687 9 41284670 41288835 GST