Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0149 ATGGCCCCTTCATTCGACACAAGTACTCATACGGTATGCGTGATGGATGCTTCGGGCCACTTGGGCTTCAGCCTGGTCCAAAGACTCCTCCAAAGGGGCTACACCGTTCATGCCTCCGTTCAATCATATGGGGAAGAAAACCTTTTCAATGGAATTTCATCTGATCCCGATAAGCTTAGGGTTTTTCGATCTGACCCATTTGATTACCATAGCATAATCGATGCTCTCCGAGGTTGCTCTGGTTTGTTCTACTCATTCGAACCTCCCTTTGACCAACCAAATTATGATGAATACATGGCAGACGTGGAAGTAAGAGCAGCACACAACGTGCTGGAAGCATGTGCTCAGACAGAAACTATAGATAAAGTGATTTTCACTTCCTCAGCTACCGCAGTTGTTTGGAGGGAAGATCGCAAGACCATGGAACTAGATCTAGATGAGAGACATTGGAGTGATGTTAATTTCTGTCGCAAATTCAAGTTATGGCATGGGGTGTCAAAGACAATGGCAGAGAAGAGCGCGTGGGCCTTGGCAATGGACAGAGGAGTGAACATGGTGTCCATCAACGCAGGCTTATTGATGGCGCATGATCTCTCCGTCAAACACCCTTACCTAAGAGGAGCCGCAGAGATGTACGAGGATGGGGTGTTCGTGACCGTTGATTTGGGCTTCTTGGTCGACGCCCACATCTGCGTCTACGAGGATGTCTCATCCTACGGTCGTTATTTGTGCTTCAATCACATTATCAACACCCACGACGACGCCGTTCAGCTCGCCCGCAAGTTGACGCCTGGTGCCTCTTCCTCCTTGCAGCAAAGTGATGACTACGGGAAGAGTTTTATCGAACAGAGAATTAACAACAAGAAGTTGAACAAATTGATGGTGGACTTCGAGGCTTGA 900 0.48 MAPSFDTSTHTVCVMDASGHLGFSLVQRLLQRGYTVHASVQSYGEENLFNGISSDPDKLRVFRSDPFDYHSIIDALRGCSGLFYSFEPPFDQPNYDEYMADVEVRAAHNVLEACAQTETIDKVIFTSSATAVVWREDRKTMELDLDERHWSDVNFCRKFKLWHGVSKTMAEKSAWALAMDRGVNMVSINAGLLMAHDLSVKHPYLRGAAEMYEDGVFVTVDLGFLVDAHICVYEDVSSYGRYLCFNHIINTHDDAVQLARKLTPGASSSLQQSDDYGKSFIEQRINNKKLNKLMVDFEA* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0149 299 Gene3D - 4 299 - -
Gso1g0149 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 264 IPR036291 -
Gso1g0149 299 CDD FR_SDR_e 12 295 - -
Gso1g0149 299 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 14 172 IPR002225 GO:0003854|GO:0006694|GO:0016616
Gso1g0149 299 PANTHER CINNAMOYL-COA REDUCTASE-LIKE SNL6 5 298 - -
Gso1g0149 299 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 5 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0149 Gso-Chr1 1679155 1682592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0149 12 264 Miscellaneous Gene Families AT5G19440 31.461 8.11e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0149 - - gmx:100790333 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0149 1 1679155 1682592 Gso1g0149 1 1679155 1682592 ECH
Gso1g0149 1 1679155 1682592 Gso9g1697 9 41376662 41379862 GST