Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0098 ATGGCTGCTCTGCAATACTTGGAATCGCTGCGCAACGCGCATCCTGAGCTCTCCGATTGGTACAATTCGCTGGCGGATCTATACCAGAACAAGCTCTGGCACCAGCTTACCCTCAAGCTTGAGCAGTTCGTGGCTCTCGCCGTCTTCCAGGCCGGTGATGCATTAATACAATTATATCACAATTTCATCACAGACTTTGAGACCAAAATCAACCTTCTCAAGCTTGCGCATTTCGCTGTTATAGTTTCTCGGCAGTATGCTGAGAAAGAAGCTGCGGTTGGTTATCTTGGAGGGGTTATTCAGAAACTTCAAGATACTAGAGAGCAGCGCATAGAAGAACCTATTCTTTACATTAAGATGCAAATAGCAATATTAAAGCTTGAGCAAGGTGATCAAAAGGAATGCAAGAAACTTCTAGAAGATGGAAAGAGTACACTAGACAGCATGACAGATATTGATCCATCTGTATATGCTAGCTATTACTGGGTATCATCTCAGTTTCATAAGACACGTCAAGAATTTGCTGAGTTCTACAAAAGTGCCCTTCTCTATTTGGCATACACATCAGTGGAATCTCTCTCTGATTCATTCAAGCTGGATCTGGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACAACTTCGGAGAGCTACTTGCCCATCCTATAATTAAGAGCCTTATGGGGACAAAGGTGGAATGGCTTTACTACATTCTGCAGGCATTCAATGCTGGTGATTTATTACAATATCAAGAATTATGTCGGGTGCATAATGCTGCTTTAAGAGCCCAACCAGCACTAGTTCAAAATGAGCAAAAGTTGTCGGAAAAGATCAACATTCTGTGTTTGATGGAGATTATATTCAGTCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGTACAAAGCTTTCTATAGAGAATGTGGAGCATCTCCTCATGAAGAGCCTATCTGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTCCACGTTTCTTGGGTGCAGCCAAGAGTTCTGGGTATTCAACAGATCAAATCCTTACGGGATCGACTAGACAGTTGGACCGGAAAAGTTCACACTGCATTGTTGTCCATTGAGGCAGAAACACCTGATCTAATTGGATCGTGA 1161 0.4298 MAALQYLESLRNAHPELSDWYNSLADLYQNKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYAEKEAAVGYLGGVIQKLQDTREQRIEEPILYIKMQIAILKLEQGDQKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFHKTRQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLMGTKVEWLYYILQAFNAGDLLQYQELCRVHNAALRAQPALVQNEQKLSEKINILCLMEIIFSRPSEDRTIPLSVIAERTKLSIENVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQIKSLRDRLDSWTGKVHTALLSIEAETPDLIGS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0098 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 - -
Gso1g0098 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B-LIKE 1 384 - -
Gso1g0098 386 SUPERFAMILY "Winged helix" DNA-binding domain 277 348 IPR036390 -
Gso1g0098 386 ProSiteProfiles PCI domain profile. 174 347 IPR000717 -
Gso1g0098 386 SMART PINT_4 272 365 IPR000717 -
Gso1g0098 386 Pfam PCI domain 238 343 IPR000717 -
Gso1g0098 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 1 384 IPR035298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0098 Gso-Chr1 1084220 1088963 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0098 K03039 - gmx:100793480 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0098 1 1084220 1088963 Gso1g0098 1 1084220 1088963 ECH
Gso1g0098 1 1084220 1088963 Gso9g1736 9 41816051 41821546 GST