Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1927 ATGTCCCGTTTCCTAGGAAAATCCCTTAGGACTAAGGGGCCCTTGTTTCTGCACAAAATTTTGGGAATCTCGTCCGAGTCGCATAACATCCTGGTTTTATCAAGGTATCGCCGCCACTTTTCACATTCCCTTCCCCACAATACTTCAAATTTGGTTCCAAGTACCGGGTCTCTCCAAATTCGGTTCTTTGCCTCTGAGGCCGCTGCTGCCACCACTGAACCCTCAACCTCCGATGGGCTCACGGTCCAAGGAATTCTGGCCAATAATTGGAACATTCTCGACGAAAACGACGGCGATTGGAAGAGTCATGCCACCGCCATAGCTCAATCTATTCACTTGATCAAACGCCGTTTACATTGGGAAAAATTGAAGGTGAGGTTGGATATGTTATCATTCCAGCTGAGTAAGGAAGACCTTTGGGATGATCCGGTGCGTGCAGGTAAAATAAGCCGAGAGCACGGTTCGCTCTTGGGAAAAATGAAAGAGGTAAATGCATTTGAACAAGAGTTGCTTGAGCACATTGACATGATAAAGCTTGCGCGCGAAGAGAATGATGCGGATTTGGAATCGGAATCACTGAAAGCGTTGCTTAACATGAGAAGAAATGCAAAAGAGAAAGAGCTAGAGGCATTGCTTTCTGGGGAGCAAGATTCTTGTTCGTGCTACATTGAGGTTCAAGCTGGTGCTGGGGGTACTGAGAGCATGGACTGGGCTGCGATGGTCATGCAGATGTATAAGTCATGGGCACAGCGACGTGGATATAAAGTAACTGTAGTGGATGAAATGCCTGGTGAGATTGCAGGAATCAAGCGAGCTACCATCAAAGTAGATGGTGAGTTTGCATTTGGATATGCCAAAGCAGAAATAGGAGTGCACAGGCTGGTGCGCATATCACCTTTTGACAGTAATAAGCGCCGGCATACTTCATTTGCCGCTGTGGCAGTGATTCCAATCCTTGGTGATGGATCTACCCATGTACAAATTAATGAATCTGATCTTCGAATTGAACGATTTCGTGCTGGTGGTGCTGGTGGCCAACATGTTAACACAACTGAGAGTGCTGTAAGAATAGTTCATATTCCTACAGGAGTTACTGCAACTTGTCAGAATGAAAGATCGCAGCATCAGAATAAGGCTTCAGCAATGGCTGTACTTCAGTCAAGATTAGACCAACTGGAGATGGCACGCCAGGCACAGTTCAATGCACAACATACACAATCTCTCACCGACATAACATGGGGCAGTCAGATTCGTAGTTATGTTCTCCATCCTTACCGTATGGTGAAAGATCTTAGAACTAACTATGAGGTTTCAGATCCTGACTCTGTCCTTGAGGGAGATCTAGACAGTTTCATCTTAAGCTATCTGTCAGCTTCTTTGGATAAAGATGATGATGCTTAA 1401 0.4554 MSRFLGKSLRTKGPLFLHKILGISSESHNILVLSRYRRHFSHSLPHNTSNLVPSTGSLQIRFFASEAAAATTEPSTSDGLTVQGILANNWNILDENDGDWKSHATAIAQSIHLIKRRLHWEKLKVRLDMLSFQLSKEDLWDDPVRAGKISREHGSLLGKMKEVNAFEQELLEHIDMIKLAREENDADLESESLKALLNMRRNAKEKELEALLSGEQDSCSCYIEVQAGAGGTESMDWAAMVMQMYKSWAQRRGYKVTVVDEMPGEIAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRHTSFAAVAVIPILGDGSTHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQAQFNAQHTQSLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDSFILSYLSASLDKDDDA* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1927 466 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 339 355 IPR000352 GO:0003747|GO:0006415
Gso19g1927 466 Gene3D - 223 452 - -
Gso19g1927 466 Hamap Peptide chain release factor 2 [prfB]. 96 460 IPR004374 GO:0005737|GO:0006415|GO:0016149
Gso19g1927 466 Coils Coil 163 183 - -
Gso19g1927 466 TIGRFAM prfB: peptide chain release factor 2 102 458 IPR004374 GO:0005737|GO:0006415|GO:0016149
Gso19g1927 466 Gene3D - 319 415 - -
Gso19g1927 466 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 88 464 - -
Gso19g1927 466 PANTHER PEPTIDE CHAIN RELEASE FACTOR PRFB1, CHLOROPLASTIC-RELATED 88 464 - -
Gso19g1927 466 Pfam RF-1 domain 325 432 IPR000352 GO:0003747|GO:0006415
Gso19g1927 466 Gene3D Release factor 99 209 - -
Gso19g1927 466 SUPERFAMILY Release factor 123 459 IPR045853 -
Gso19g1927 466 Pfam PCRF domain 125 313 IPR005139 GO:0006415
Gso19g1927 466 SMART PCRF_a_2 178 288 IPR005139 GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1927 Gso-Chr19 47989756 47993031 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1927 K02836 - gmx:100797427 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1927 19 47989756 47993031 Gso19g1927 19 47989756 47993031 ECH