Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso19g1865 | ATGGCGGGAACTGAAGCCAAAAAAACTGAATCCAAAAAACCTGCCGCTAAGCAATCCGGTGCGAAGAAGAAGGAGGTGAAGAAGGAAACTGGCTTAGGTCTCACGCATCGGAAGGCGGAGAACTTCGGAGAGTGGTATTCCGAGGTGGTTGTTAATGCGGAAATGATTGAGTACTATGATATTTCCGGTTGCTATATTCTGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAAGAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTCCCATTGTTTGTATCTCCTGGAGTTCTGCAAAAGGAGAAGGACCACGTTGAGGGTTTTGCTCCTGAGGTTGCTTGGGTGACAAAGTCTGGGGAATCCGAATTAGAAATTCCTATAGCTATTCGTCCTACTAGTGAAACAGTGATGTATCCCTACTACTCTAAGTGGATAAGGGGACATCGTGACTTGCCTTTGAAACTTAATCAGTGGTGCAATGTTGTAAGATGGGAGTTCAGCAACCCCACTCCATTCATCAGGAGTCGCGAGTTTCTTTGGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAGGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACCAGTGTTGAGGCATTTATTCCAAACACTGGTCGTGGTATCCAAGGTGCAACTTCTCATTGTTTGGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAAAGGGAGAGAAAGCAATGGTCTGGCAGAATTCATGGGCCTATAGTACTCGAACTATTGGGGTCATGGTGATGGTTCATGGTGATGACAAGGGATTGGTACTACCTCCTAAAGTAGCATCAGTACAAGTTATTGTGATTCCTGTGCCTTACAAAGATGCCGATACTCAAGGAATCTTTGATGCCTGTTCTGCAACTGTGAATACATTGAATGAAGCAGGTATTCGCGCTGAGTCAGATTCTAGAGATAATTATTCTCCTGGATGGAAGTATTCCAACTGGGAAATGAAAGGGGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGGTTCGCGCTGTTCGACGTGATAATGGTGCAAAGATAGACATTGCTAGTGCTGATTTGGTTGTGGAAATAAAAAAGTTGCTCGATACTATTCAACAGAACCTGTTTGATGTTGCAAAACAAAAACGAGATGAATGCATTCAGATCATACACACTTGGGATGAATTTGTGCAAGCTTTGAACCAAAGAAAAATGATCTTAGCTCCTTGGTGTGACGAGGAGGAGGTTGAGGCTGATGTCAAAGCGAGGACAAAGGGTGAGATGGGAGCAGCTAAGACTCTTTGCAGTCCCTTTGATCAGCCAGAACTCCCAGAAGGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGGGAAGAAGTTACTAG | 1548 | 0.4322 | MAGTEAKKTESKKPAAKQSGAKKKEVKKETGLGLTHRKAENFGEWYSEVVVNAEMIEYYDISGCYILRPWSMAIWEIMQEFFDPEIKKMKIKNCYFPLFVSPGVLQKEKDHVEGFAPEVAWVTKSGESELEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKDEADAEVLEILELYRRIYEEYLAVPVIKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIFDACSATVNTLNEAGIRAESDSRDNYSPGWKYSNWEMKGVPLRIEIGPKDLANKQVRAVRRDNGAKIDIASADLVVEIKKLLDTIQQNLFDVAKQKRDECIQIIHTWDEFVQALNQRKMILAPWCDEEEVEADVKARTKGEMGAAKTLCSPFDQPELPEGTKCFASGKPATKWTYWGRSY* | 516 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso19g1865 | 515 | CDD | ProRS_core_arch_euk | 41 | 302 | IPR033721 | - | |
| Gso19g1865 | 515 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Gso19g1865 | 515 | Hamap | Proline--tRNA ligase [proS]. | 35 | 515 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Gso19g1865 | 515 | Pfam | Anticodon binding domain | 319 | 415 | IPR004154 | - | |
| Gso19g1865 | 515 | Gene3D | - | 436 | 515 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Gso19g1865 | 515 | Gene3D | - | 313 | 433 | IPR036621 | - | |
| Gso19g1865 | 515 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 97 | 312 | IPR006195 | - | |
| Gso19g1865 | 515 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 134 | 300 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Gso19g1865 | 515 | TIGRFAM | proS_fam_I: proline--tRNA ligase | 37 | 515 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Gso19g1865 | 515 | SMART | ProRS_C_1_2 | 442 | 515 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Gso19g1865 | 515 | Pfam | Prolyl-tRNA synthetase, C-terminal | 442 | 515 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Gso19g1865 | 515 | PRINTS | Prolyl-tRNA synthetase signature | 93 | 111 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Gso19g1865 | 515 | PRINTS | Prolyl-tRNA synthetase signature | 134 | 145 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Gso19g1865 | 515 | PRINTS | Prolyl-tRNA synthetase signature | 164 | 172 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Gso19g1865 | 515 | PRINTS | Prolyl-tRNA synthetase signature | 174 | 185 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Gso19g1865 | 515 | PANTHER | PROLYL-TRNA SYNTHETASE | 5 | 515 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Gso19g1865 | 515 | CDD | ProRS_anticodon_zinc | 308 | 515 | - | - | |
| Gso19g1865 | 515 | SUPERFAMILY | Class II aaRS ABD-related | 307 | 434 | - | - | |
| Gso19g1865 | 515 | SUPERFAMILY | C-terminal domain of ProRS | 438 | 515 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Gso19g1865 | 515 | PANTHER | PROLINE--TRNA LIGASE, CYTOPLASMIC-LIKE | 5 | 515 | - | - | |
| Gso19g1865 | 515 | Gene3D | Bira Bifunctional Protein; Domain 2 | 35 | 312 | IPR045864 | - | |
| Gso19g1865 | 515 | SUPERFAMILY | Class II aaRS and biotin synthetases | 40 | 306 | IPR045864 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso19g1865 | Gso-Chr19 | 47323594 | 47328637 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso19g1865 | K01881 | - | gmx:100782067 | 1061.6 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso19g1865 | 19 | 47323594 | 47328637 | Gso3g1902 | 3 | 44548839 | 44553608 | GST |