Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1860 ATGCGTTGCGTGAATAGATTATTGTCGCGGACGCCATGTTCCTTCCCCCGCAACATGTGTACGGTTACATCCGCAAAGCTTAACTACATGATCGACGCTTACATACAAGGCAACAACATAAACAATGCTCGAAAACTGTTTGACGAAAACCCCTCGTCCCGCAACCTCGTATCCTGGAACATGATGATGACTGGTTACGTCAAACACCATCAAATTCAATATGCCCAGTACCTGTTCGATCAAATGCCCTTCAAAGACACGGTTTCTTGGAATATCATGCTCTCTGGTTTTCACAGAATCACAAACTCTGATGGGTTGTACCGCTGTTTCTTGCAAATGGGAAGAGCTGGTGTGCCCCCCGATGACTATACCGTCTCCACATTGCTCAGAGCGGTTATAAGCACCGAGTTAGATGTTTTGATCCCCCAGCTTCACGCTCGAGCGCTGCATTTAGCACTTAACTTGAGTGTGTTTGTTGGGTCTTCGTTGATCAGAGCTTATGCCAGTTTAAGAGACGAGGAGGCTTTTAAGCAAGCGTTTGATGATATATTGGGGAAAGATGTCACGTCTTGGAATGCTTTGGTTTCTGGTTATATGGAAGTGGGAAGTATGGATGATGCTCAAACAACCTTTGATATGATGATGCCTGAGAAAAACATAATTTCATGGACTACTTTGGTGAATGGTTATATCAGGAACAAGAGGATAAACAAAGCAAGGTCTGTTTTTAACAAAATGAGCGAGAGGAATGTGGTGTCTTGGACGGCAATGATTAGTGGGTATGTGCAAAATAAGAGATTTATGGATGCTTTGAATCTTTTTCTTCTGATGTTTAATTCGGGAACTTGTCCCAATCATTTCACGTTCTCAAGTGTGTTGGACGCATGTGCTGGTTGTTCATCCCTTTTGACAGGAATGCAGGTGCACCTGTGCGTTATCAAGTCTGGCATACCAGAGGATGTCATCTCATTGACCTCGCTTGTGGATATGTATGCAAAATGCGGGGATATGGATGCAGCATTTCGTGTTTTTGAGTCCATTCCGAATAAGAATTTGGTGTCATGGAATTCAATAATTGGTGGCTGTGCCAGGAATGGAATAGCTACCCGAGCACTGGAGGAGTTTGATAGGATGAAAAAAGCTGGTGTTACACCAGATGAAGTTACTTTTGTAAATGTGTTGTCAGCGTGTGTGCATGCAGGTCTTGTTGAAGAAGGTGAAAAGCACTTTACTTCTATGTTGACCAAGTATGAAATCCAAGCAGAGATGGAGCACTATACTTGCATGGTGGACCTCTATGGAAGGGCAGGGCAATTTGATGAAGCTTTAAAGTCGATCAAGAATATGCCATTTGAGCCTGACGTGGTGTTGTGGGGTGCGCTGCTTGCAGCTTGTGGCCTGCATTCAAATTTAGAAATTGGAGTGTATGCTGCAGAGAGGATCCGCAAACTGGAGAGCGATCATCCTGTTTCCTACTCAATTCTTTCAAAGATCCAAGGTGAGAAAGGAATATGGAGCAGTGTAAATGAATTGAGGGACATGATGAAGGAGAGACAAGTCAAAAAGCAGAAGGCATCGAGTAAGCTCTTTCTGTAA 1596 0.4367 MRCVNRLLSRTPCSFPRNMCTVTSAKLNYMIDAYIQGNNINNARKLFDENPSSRNLVSWNMMMTGYVKHHQIQYAQYLFDQMPFKDTVSWNIMLSGFHRITNSDGLYRCFLQMGRAGVPPDDYTVSTLLRAVISTELDVLIPQLHARALHLALNLSVFVGSSLIRAYASLRDEEAFKQAFDDILGKDVTSWNALVSGYMEVGSMDDAQTTFDMMMPEKNIISWTTLVNGYIRNKRINKARSVFNKMSERNVVSWTAMISGYVQNKRFMDALNLFLLMFNSGTCPNHFTFSSVLDACAGCSSLLTGMQVHLCVIKSGIPEDVISLTSLVDMYAKCGDMDAAFRVFESIPNKNLVSWNSIIGGCARNGIATRALEEFDRMKKAGVTPDEVTFVNVLSACVHAGLVEEGEKHFTSMLTKYEIQAEMEHYTCMVDLYGRAGQFDEALKSIKNMPFEPDVVLWGALLAACGLHSNLEIGVYAAERIRKLESDHPVSYSILSKIQGEKGIWSSVNELRDMMKERQVKKQKASSKLFL* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1860 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 55 85 IPR002885 -
Gso19g1860 531 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 18 528 - -
Gso19g1860 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 350 IPR002885 -
Gso19g1860 531 Pfam E motif 468 523 IPR046848 -
Gso19g1860 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 217 IPR002885 -
Gso19g1860 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Gso19g1860 531 Pfam PPR repeat 190 214 IPR002885 -
Gso19g1860 531 Pfam PPR repeat 425 449 IPR002885 -
Gso19g1860 531 Pfam PPR repeat 28 49 IPR002885 -
Gso19g1860 531 Pfam PPR repeat 57 83 IPR002885 -
Gso19g1860 531 Gene3D Tetratricopeptide repeat domain 143 213 IPR011990 GO:0005515
Gso19g1860 531 Gene3D Tetratricopeptide repeat domain 214 306 IPR011990 GO:0005515
Gso19g1860 531 Gene3D Tetratricopeptide repeat domain 12 140 IPR011990 GO:0005515
Gso19g1860 531 Pfam PPR repeat family 249 297 IPR002885 -
Gso19g1860 531 Pfam PPR repeat family 85 132 IPR002885 -
Gso19g1860 531 Pfam PPR repeat family 350 398 IPR002885 -
Gso19g1860 531 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 18 528 - -
Gso19g1860 531 TIGRFAM PPR: pentatricopeptide repeat domain 252 285 IPR002885 -
Gso19g1860 531 TIGRFAM PPR: pentatricopeptide repeat domain 221 252 IPR002885 -
Gso19g1860 531 TIGRFAM PPR: pentatricopeptide repeat domain 323 351 IPR002885 -
Gso19g1860 531 TIGRFAM PPR: pentatricopeptide repeat domain 57 83 IPR002885 -
Gso19g1860 531 TIGRFAM PPR: pentatricopeptide repeat domain 353 387 IPR002885 -
Gso19g1860 531 Gene3D Tetratricopeptide repeat domain 351 529 IPR011990 GO:0005515
Gso19g1860 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Gso19g1860 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1860 Gso-Chr19 47286157 47288706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1860 66 527 Glycoside Hydrolase AT3G49170 32.609 1.06e-83 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1860 - - gmx:102665683 1059.28