Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1832 ATGGCTCCTCCAAACAATCCAGTGAATTCCACCTTGGGATTTAAGTCACTGGAAAAGGTTTTTGATTTATGTGACGGGAAATTCACCGTGAGAGGTGTGCCATTACTCTCTCAGGTACCCAATAACGTCACTTTCAGTTCCTTCTCCTCAATCTGTGAACCCCGTGACGCCCCACCTTCCATCCTTCAACGTGTCATTGCCGTGTCACACAAAGGTGGCTTCTTCGGATTCTCCCAGGTTTCTCCCTCCGACAGATTAACAAACTCCTTAGGTAGTTTCAGTGGCAGAAACTTCCTTAGCATCTTCAGGTTCAAAACATGGTGGTCTACCCAGTGGGTAGGAAATTCCGGTTCAGACCTTCAAATGGAAACCCAGTGGGTCCTCATAGAAATCCCCGAAATAAAATCCTATGTTGTAATCATTCCCATCATTGAAAAATCTTTCAGGTCCGCACTTCACCCTGGCTCTGATGGCCATGTCATGATTTGTGCTGAGAGTGGTTCAACTCAAGTGAAAGCATCGAGTTTCGGTGCAATTGCTTATGTCCACGTTTCTGAGAACCCTTACAACGTGATGAAAGAAGCCTATAGTGTTCTCAGGGTTCACCTCGATTCGTTCAGGTTGTTGGAGGAGAAAACGGTGCCAAAAATTGCTGACAAGTTCGGTTGGTGCACTTGGGATGCGTTCTACTTAACCGTGAACCCTGTTGGGGTTTGGCATGGGCTTAAGGATTTTGCCGAGGGTGGGGTGGCTCCGAGGTTTGTTATCATTGATGATGGCTGGCAAAGTGTGAATTTTGATGGTGATGACCCCAACGTGGATGCTAAGAATCTTGTTCTTGGCGGGGAACAAATGACTGCGAGGCTTCATAGATTTGAAGAATGTGACAAGTTTGGAAGTTACCAAAAGGGGCTCCTTTTGGGTCCTAATGCTCCTTCTTTTAACCCAAAGACGGTTAAGGAGTTGATTGCGAAGGGGATAGAAGTTGAGCGTTTGGGGAAGCTGCGTGATGAGGCTGTTTCGTCTGGGGTTTCTGATTTGAGTTTGACCGAGATTGAGTCGAGGATTGTGAAGGTGAAAAAGGAAATTGATGATCTCTTTGGTGGGGAGGGAAAGGAGAACAAAGAATTATGTGGAGGGTGTTGTTGCAAAGCAAATGAGTGTGGTGGGATTAAGGCTTTCATAAGGGACTTGAGGACTGAATTCAAAGGTTTGGATGATGTCTATGTGTGGCATGCCCTTTGTGGCTCGTGGGGTGGTGTGAGGCCAGGAGCCACACACTTGAATTCCAAAATAACACCTTGCAAACTCTCCCCTGGCCTTGATGGGACCATGCAAGATCTTGCTGTGGTTAAAATAGTGGAAGGTTCCATAGGACTTGTTCATCCTGATCAAGCTAATGACTTGTACGATTCCATGCACTCTTATCTTGCCCAATCTGGTGTTACCGGAGTCAAAATTGACGTCTTTCATAGTCTTGAATATGTGTGCGAGGAATATGGAGGCAGAGTCGAGCTTGCAAAGGCTTATTACGATGGGTTGACAAACTCTATTGTCAAGAATTTTAATGGAAGTGGAATCATCGCTAGCATGCAGCAGTGCAACGACTTTTTCTTCCTTGGAACCAAGCAAATTCCCATGGGAAGAGTTGGGGATGACTTTTGGTTCCAAGACCCCAATGGGGACCCAATGGGAGTGTTCTGGTTACAAGGGGTGCACATGATTCACTGTGCCTACAACAGTTTGTGGATGGGGCAGATGATTCAGCCCGATTGGGACATGTTCCAATCGGATCATGTGTGTGCCAAATTTCATGCGGGTTCGAGGGCTATTTGTGGCGGTCCTGTCTATGTAAGTGACAGTGTGGGCTCTCATGACTTTGATCTCATTAAGATGCTTGTGTTCCCTGATGGTACCGTGCCCAAATGCATACATTTTGCACTTCCAACAAGAGATTGCCTTTTCAAGAACCCTCTCTTTGACCAAAAAACCGTTCTCAAAATTTGGAACTTCAACAAGTATGGAGGAGTTATTGGTGCTTTCAACTGTCAAGGGGCTGGTTGGGACCCTAAGATGAAGAAGATCAAGGGTTTCTCTGAATGCTACAGGCCAATTTCTTGTACTGTGCATGTAACTGAGGTTGAATGGGACCAAAAGAAAGAAGCAGTTCACATGGGTAAGGCAGAGGAGTATGTCGTGTATCTCAATCAGGCTGAGGAACTGCATTTCATGACCCCAAAGTCTGAACCACTCCAATTTACTATTCAACCTTCCACTTTTGAGATCTACAACTTTGTCCCAGTTGAAAAGCTAGGTGGCAGCATCAAATTTGCACCAATTGGGCTCACAAACATGTTCAACAGTGGAGGGACAATTCAAGAATTGGAGTGTGTTGAGAAGGGTGCAAAGGTTAAGGTTAAGGGTGATGGGAGATTCCTTGCTTACTCAAGTGAATCTCCAAAGAAGTTCCAACTGAATGGTTCTGATGTTGCTTTTGAGTGGCTCCCTGATGGAAAACTCACTCTCAACCTTGCTTGGATTGAAGAGAATGGCGGGGTTTCTGATTTGGCAATTTTCTTCTAG 2583 0.4557 MAPPNNPVNSTLGFKSLEKVFDLCDGKFTVRGVPLLSQVPNNVTFSSFSSICEPRDAPPSILQRVIAVSHKGGFFGFSQVSPSDRLTNSLGSFSGRNFLSIFRFKTWWSTQWVGNSGSDLQMETQWVLIEIPEIKSYVVIIPIIEKSFRSALHPGSDGHVMICAESGSTQVKASSFGAIAYVHVSENPYNVMKEAYSVLRVHLDSFRLLEEKTVPKIADKFGWCTWDAFYLTVNPVGVWHGLKDFAEGGVAPRFVIIDDGWQSVNFDGDDPNVDAKNLVLGGEQMTARLHRFEECDKFGSYQKGLLLGPNAPSFNPKTVKELIAKGIEVERLGKLRDEAVSSGVSDLSLTEIESRIVKVKKEIDDLFGGEGKENKELCGGCCCKANECGGIKAFIRDLRTEFKGLDDVYVWHALCGSWGGVRPGATHLNSKITPCKLSPGLDGTMQDLAVVKIVEGSIGLVHPDQANDLYDSMHSYLAQSGVTGVKIDVFHSLEYVCEEYGGRVELAKAYYDGLTNSIVKNFNGSGIIASMQQCNDFFFLGTKQIPMGRVGDDFWFQDPNGDPMGVFWLQGVHMIHCAYNSLWMGQMIQPDWDMFQSDHVCAKFHAGSRAICGGPVYVSDSVGSHDFDLIKMLVFPDGTVPKCIHFALPTRDCLFKNPLFDQKTVLKIWNFNKYGGVIGAFNCQGAGWDPKMKKIKGFSECYRPISCTVHVTEVEWDQKKEAVHMGKAEEYVVYLNQAEELHFMTPKSEPLQFTIQPSTFEIYNFVPVEKLGGSIKFAPIGLTNMFNSGGTIQELECVEKGAKVKVKGDGRFLAYSSESPKKFQLNGSDVAFEWLPDGKLTLNLAWIEENGGVSDLAIFF* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1832 860 Pfam Raffinose synthase or seed imbibition protein Sip1 23 843 IPR008811 -
Gso19g1832 860 PANTHER - 1 860 IPR008811 -
Gso19g1832 860 SUPERFAMILY (Trans)glycosidases 214 268 IPR017853 -
Gso19g1832 860 SUPERFAMILY (Trans)glycosidases 390 634 IPR017853 -
Gso19g1832 860 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 4-RELATED 1 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1832 Gso-Chr19 47036288 47039776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1832 21 860 Glycoside Hydrolase AT4G01970 59.412 0.0 1048
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1832 K06611 - gmx:100815922 1786.54